Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d09
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541... 131 5e-31
06_03_1146 - 28004896-28005554,28005664-28005844 33 0.24
10_08_0577 + 18894171-18894917 31 0.55
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 31 0.96
05_03_0458 + 14280953-14281866,14281964-14282912 30 1.3
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039 29 2.2
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 29 2.2
10_08_1018 + 22298098-22298691 29 2.9
09_04_0071 - 14313737-14315091,14316131-14316207,14316604-143167... 29 3.9
08_01_1034 - 10482670-10483400,10483442-10483964 29 3.9
07_03_1359 - 25985936-25986083,25986424-25986782,25987026-259871... 29 3.9
01_06_1469 - 37578597-37578700,37578893-37579019,37579177-375792... 29 3.9
07_03_0756 - 21272122-21272784 28 5.1
09_04_0512 + 18226981-18227143,18227648-18229555,18229649-182302... 28 6.8
06_03_0470 - 21113186-21114183,21114273-21115824 28 6.8
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364... 27 8.9
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916... 27 8.9
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 27 8.9
01_06_0453 + 29501600-29502403 27 8.9
01_01_0650 - 4948852-4950012 27 8.9
>02_01_0724 -
5415218-5415280,5415398-5415523,5415614-5415710,
5415797-5415861,5415964-5416026,5416127-5416197,
5416430-5416489,5416564-5416663,5416863-5416938,
5417284-5417358,5417451-5417575,5417664-5417722,
5418031-5418109,5418303-5418533
Length = 429
Score = 131 bits (316), Expect = 5e-31
Identities = 58/124 (46%), Positives = 82/124 (66%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
+DI LEV I+ ++ + V +SN++++YWT+ QQLA TV GCNLRPGD+ +GT+SG
Sbjct: 308 YDIPLEVWIKPKEQSEPSMVAKSNFKHLYWTLTQQLAHHTVNGCNLRPGDMFATGTLSGP 367
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
+S G +LEL+W G K + + RKF++DGD V L C G +GFG C GK+L
Sbjct: 368 ETESLGCLLELTWNGQKEISVG-NSTRKFLEDGDEVILTA-CCKGEGYNVGFGTCTGKVL 425
Query: 217 PAIP 206
PA+P
Sbjct: 426 PALP 429
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/75 (26%), Positives = 31/75 (41%)
Frame = +3
Query: 228 PSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKESAASPL 407
P +P+P SP + +++PS + SP + + P + P A
Sbjct: 154 PVPMPSPASSPPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPPAPAA 213
Query: 408 MVPEPSKSPGLRLQP 452
M P PS +PG QP
Sbjct: 214 MAPSPSTTPGGVAQP 228
>10_08_0577 + 18894171-18894917
Length = 248
Score = 31.5 bits (68), Expect = 0.55
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 383 ERVRRLPADGARAEQVSRSEVAARDSLLRQLLFHR 487
E+VRR A+ AR EQ+ R V RDS LR R
Sbjct: 24 EKVRRDEAEAAREEQLQREAVRRRDSDLRLAALRR 58
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 315 NSYRTETRSHCAATASTRPDSE*GSGDARGNYYRPYL 205
N TETRSH AA TRPD DA P L
Sbjct: 620 NREPTETRSHAAAVTPTRPDEVILKDDASNKTVAPSL 656
>05_03_0458 + 14280953-14281866,14281964-14282912
Length = 620
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 282 RNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKESAASPLMVPEPSKSPGLRLQPVTV 461
RN SP N S+P T VP + P S +SP +P +P L P T+
Sbjct: 27 RNAAPSPPSSN--STPTSSTTPTVPPSLTTTSSPSSSPSSPPPLPPLQPTPP-PLPPTTL 83
Query: 462 CCAS 473
C+S
Sbjct: 84 SCSS 87
>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
Length = 218
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 396 RRTLSEACWNCPGRAPSPFAFRLVR-RGNSYRTETRSHCAATASTRPDSE 250
R T S A PG R VR RGN ++ RSHC+ +A P SE
Sbjct: 15 RNTRSRATRRQPGLQE---LLRTVRGRGNEQDSKGRSHCSRSAPASPSSE 61
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -1
Query: 254 QNRVRE--MRGETITGHTFPRM-KYIYRQVKGLFNPLTVMK 141
Q + RE + GE+ GH P++ + IY Q KG+ NP+ +K
Sbjct: 167 QYKYREFYIAGESYAGHYVPQLAQLIYEQNKGIQNPIINLK 207
>10_08_1018 + 22298098-22298691
Length = 197
Score = 29.1 bits (62), Expect = 2.9
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +3
Query: 222 SFPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDN--SNMLPKESA 395
SFP+ LP IL + L ++ + ++FLS + RR L+ ++ S+ + +S+
Sbjct: 29 SFPTLLPVFILFVLLLCFL--SIFLVRDLLHFLSLCLRRRRLLLRHGEDHDSSSVSMQSS 86
Query: 396 ASPLMVPEPSKSPGL 440
ASP+ P K PGL
Sbjct: 87 ASPINAQAPRKPPGL 101
>09_04_0071 -
14313737-14315091,14316131-14316207,14316604-14316725,
14316838-14316924,14317000-14317066,14317135-14317290,
14318689-14318837
Length = 670
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 246 PILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKESAASPLMVPEPS 425
P L V + V SP C + +P +VPF +M+P +SA P + +P+
Sbjct: 602 PCLEIVVSTPSEQVVNQSPGCQSQSPAPY---LAIVPFDAAHDMVPLQSADPPGLTDDPT 658
Query: 426 KSPGL 440
+ G+
Sbjct: 659 ITSGI 663
>08_01_1034 - 10482670-10483400,10483442-10483964
Length = 417
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 289 TLRGHCLNATGLRIGFGRCEGKLLPAIPFQE 197
+L+ L++ GLRIGFG G+LL P E
Sbjct: 314 SLKNLYLSSDGLRIGFGDVSGRLLRRCPAVE 344
>07_03_1359 -
25985936-25986083,25986424-25986782,25987026-25987153,
25987609-25987727,25988253-25988320
Length = 273
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Frame = -1
Query: 386 FRKHVGIVLEGHQARSPFDW*-------GEEIHTGRRHG---HIARPLPQRDRTQNRVRE 237
F + + +++E H A +P + E+ + HG H+ RP P +D QNR R+
Sbjct: 176 FPQQLPVIIEQHYAATPRELQLFPESATSEDSEPSQEHGISDHVTRPQPSKDAWQNRSRD 235
>01_06_1469 -
37578597-37578700,37578893-37579019,37579177-37579274,
37579373-37579540,37579872-37579981,37580072-37580124,
37581131-37581250
Length = 259
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 360 QDNSNMLPKESAASPLMVPEPSKSPGLRLQPVTVCCASCCFTVQ 491
++ S +P AA + +P+KSP P T +CC +Q
Sbjct: 4 KEESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQ 47
>07_03_0756 - 21272122-21272784
Length = 220
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +2
Query: 350 GALPGQFQHASERVRRLPADGARAEQVSRSEVAARDSL 463
GA G Q RVRR ADGAR + R V R SL
Sbjct: 52 GARAGPLQQG--RVRRAGADGARRRRAGRVRVRVRLSL 87
>09_04_0512 +
18226981-18227143,18227648-18229555,18229649-18230295,
18230710-18231949,18232085-18232419,18232500-18232577,
18232872-18232978,18233020-18233062
Length = 1506
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 366 NSNMLPKESAASPLMVPEPSKSPGLRLQPVTVCCAS 473
NS P SAASP ++P + G QP CC S
Sbjct: 524 NSQCSPSRSAASPDLLPLRLVNSGDVYQPSFSCCKS 559
>06_03_0470 - 21113186-21114183,21114273-21115824
Length = 849
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +3
Query: 306 CMNFLSS---PVERRTGLVPFQDNSNMLPKESAASPLM 410
C+ F++ PVER GLV +D +++ KE+ S LM
Sbjct: 362 CLRFVNKAGQPVERFLGLVHVEDTTSLTLKEAIKSLLM 399
>11_08_0022 +
27733247-27733935,27735722-27735981,27736213-27736404,
27737695-27738686
Length = 710
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 445 CSP*QSAAPVAVSPSNTCTDSSNGK 519
CS AP VSP++ C +++NG+
Sbjct: 269 CSSTSRVAPACVSPNSYCVNTTNGQ 293
>03_01_0009 -
89127-89924,90090-90518,90582-90716,91102-91382,
91634-91809,91899-92011,92157-92278,92375-92594
Length = 757
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 327 VRRGNSYRTETRSHC-AATASTRPDSE*GSGDARGNYYRPYLSKNEIYI 184
V +GNSY T T AT+S + + GSG A G Y+ YL+ + + I
Sbjct: 428 VLQGNSYSTFTWEEIDNATSSFADNLKIGSG-ANGTVYKGYLNHSAVAI 475
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 363 PGRAPSPFAFRLVRRGNSYRTETRSHCAATASTRPDSE*GSGDARGNYYRP 211
P R+PSP + VRRG + T S S PD G RG+ RP
Sbjct: 646 PSRSPSPDGSKRVRRGRGF-THRYSFARQYRSPSPDHSFRYG-GRGDRDRP 694
>01_06_0453 + 29501600-29502403
Length = 267
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 417 RAPSAGRRRTLS-EACWNCPGRAPSPFAFRLVRRGNSYRTETRSHCAATAST 265
RAP+ +R+ L + P RAP+P R V+ ET ATAS+
Sbjct: 181 RAPAQAQRQVLQVQRAQPPPPRAPAPAPARAVKSAAREEVETAQVGLATASS 232
>01_01_0650 - 4948852-4950012
Length = 386
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = +3
Query: 225 FPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKESAASP 404
F +H P+ + A + PR+V SP ++ SP+ RR + + M S S
Sbjct: 169 FFAHTPDQLRVLPAQQSSPRSVASSPLAESYDGSPL-RRQAFESYLTKTIM--SSSPTST 225
Query: 405 LMVP---EPSKSPGL 440
LM P PS+SP L
Sbjct: 226 LMSPPKSPPSESPPL 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,233
Number of Sequences: 37544
Number of extensions: 395200
Number of successful extensions: 1278
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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