Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d09
(614 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X51728-1|CAA36016.1| 349|Homo sapiens protein ( Human mRNA for ... 164 2e-40
M55150-1|AAA52422.1| 419|Homo sapiens fumarylacetoacetate hydro... 164 2e-40
BX537608-1|CAD97795.1| 349|Homo sapiens hypothetical protein pr... 164 2e-40
BT007160-1|AAP35824.1| 419|Homo sapiens fumarylacetoacetate hyd... 164 2e-40
BC002527-1|AAH02527.1| 419|Homo sapiens fumarylacetoacetate hyd... 164 2e-40
BC113374-1|AAI13375.1| 151|Homo sapiens hypothetical protein LO... 32 1.4
BC101782-1|AAI01783.1| 151|Homo sapiens hypothetical protein LO... 32 1.4
AK056625-1|BAB71234.1| 151|Homo sapiens protein ( Homo sapiens ... 32 1.4
M33907-1|AAA52672.1| 261|Homo sapiens HLA-DQB1 protein. 31 4.3
M26042-1|AAA36270.1| 261|Homo sapiens protein ( Human MHC class... 31 4.3
L34100-1|AAC41968.1| 229|Homo sapiens MHC class II HLA-DQ-beta-... 31 4.3
L34099-1|AAC41967.1| 229|Homo sapiens MHC class II HLA-DQ-beta-... 31 4.3
AY656683-1|AAV71030.1| 261|Homo sapiens MHC class II antigen pr... 31 4.3
AY375863-1|AAQ88037.1| 234|Homo sapiens MHC class II antigen pr... 31 4.3
AY375862-1|AAQ88036.1| 234|Homo sapiens MHC class II antigen pr... 31 4.3
AY375861-1|AAQ88035.1| 227|Homo sapiens MHC class II antigen pr... 31 4.3
AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen pr... 31 4.3
X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein. 30 5.6
U92032-1|AAB91991.1| 261|Homo sapiens MHC class II DQ-beta prot... 29 9.9
S49592-1|AAB24289.1| 476|Homo sapiens transcription factor E2F ... 29 9.9
M81141-1|AAA59772.1| 261|Homo sapiens lymphocyte antigen protein. 29 9.9
M81140-1|AAA59771.1| 261|Homo sapiens lymphocyte antigen protein. 29 9.9
L40179-1|AAC41976.1| 229|Homo sapiens MHC class II HLA-DQ-beta-... 29 9.9
L34095-1|AAC41963.1| 229|Homo sapiens MHC class II HLA-DQ-beta-... 29 9.9
K02405-1|AAA75521.1| 261|Homo sapiens MHC HLA-DC3-beta protein. 29 9.9
J00198-1|AAA59788.1| 230|Homo sapiens HLA-DRB1 protein. 29 9.9
AY663407-1|AAU88012.1| 261|Homo sapiens MHC class II antigen pr... 29 9.9
AY663399-1|AAU87991.1| 261|Homo sapiens MHC class II antigen pr... 29 9.9
AY375844-1|AAQ88018.1| 234|Homo sapiens MHC class II antigen pr... 29 9.9
AY375843-1|AAQ88017.1| 234|Homo sapiens MHC class II antigen pr... 29 9.9
AY375842-1|AAQ88016.1| 234|Homo sapiens MHC class II antigen pr... 29 9.9
AY333122-1|AAP93137.1| 183|Homo sapiens MHC class II HLA-DQ-bet... 29 9.9
AL935026-3|CAI18446.1| 224|Homo sapiens major histocompatibilit... 29 9.9
AL935026-2|CAI18445.1| 261|Homo sapiens major histocompatibilit... 29 9.9
AL731683-2|CAO03406.1| 261|Homo sapiens major histocompatibilit... 29 9.9
>X51728-1|CAA36016.1| 349|Homo sapiens protein ( Human mRNA for
fumarylacetoacetase (EC 3.7.1.2). ).
Length = 349
Score = 164 bits (399), Expect = 2e-40
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI L V+++ E T+C+SN++YMYWT+ QQL +V GCNLRPGDLL SGTISG
Sbjct: 225 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 284
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
++FGSMLELSWKGTKP+ L G+ RKF+ DGD V + G+C G RIGFG+C GK+L
Sbjct: 285 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYC-QGDGYRIGFGQCAGKVL 343
Query: 217 PAI 209
PA+
Sbjct: 344 PAL 346
>M55150-1|AAA52422.1| 419|Homo sapiens fumarylacetoacetate
hydrolase protein.
Length = 419
Score = 164 bits (399), Expect = 2e-40
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI L V+++ E T+C+SN++YMYWT+ QQL +V GCNLRPGDLL SGTISG
Sbjct: 295 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 354
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
++FGSMLELSWKGTKP+ L G+ RKF+ DGD V + G+C G RIGFG+C GK+L
Sbjct: 355 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYC-QGDGYRIGFGQCAGKVL 413
Query: 217 PAI 209
PA+
Sbjct: 414 PAL 416
>BX537608-1|CAD97795.1| 349|Homo sapiens hypothetical protein
protein.
Length = 349
Score = 164 bits (399), Expect = 2e-40
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI L V+++ E T+C+SN++YMYWT+ QQL +V GCNLRPGDLL SGTISG
Sbjct: 225 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 284
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
++FGSMLELSWKGTKP+ L G+ RKF+ DGD V + G+C G RIGFG+C GK+L
Sbjct: 285 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYC-QGDGYRIGFGQCAGKVL 343
Query: 217 PAI 209
PA+
Sbjct: 344 PAL 346
>BT007160-1|AAP35824.1| 419|Homo sapiens fumarylacetoacetate
hydrolase (fumarylacetoacetase) protein.
Length = 419
Score = 164 bits (399), Expect = 2e-40
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI L V+++ E T+C+SN++YMYWT+ QQL +V GCNLRPGDLL SGTISG
Sbjct: 295 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 354
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
++FGSMLELSWKGTKP+ L G+ RKF+ DGD V + G+C G RIGFG+C GK+L
Sbjct: 355 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYC-QGDGYRIGFGQCAGKVL 413
Query: 217 PAI 209
PA+
Sbjct: 414 PAL 416
>BC002527-1|AAH02527.1| 419|Homo sapiens fumarylacetoacetate
hydrolase (fumarylacetoacetase) protein.
Length = 419
Score = 164 bits (399), Expect = 2e-40
Identities = 72/123 (58%), Positives = 91/123 (73%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI L V+++ E T+C+SN++YMYWT+ QQL +V GCNLRPGDLL SGTISG
Sbjct: 295 FDINLSVNLKGEGMSQAATICKSNFKYMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGP 354
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
++FGSMLELSWKGTKP+ L G+ RKF+ DGD V + G+C G RIGFG+C GK+L
Sbjct: 355 EPENFGSMLELSWKGTKPIDLGNGQTRKFLLDGDEVIITGYC-QGDGYRIGFGQCAGKVL 413
Query: 217 PAI 209
PA+
Sbjct: 414 PAL 416
>BC113374-1|AAI13375.1| 151|Homo sapiens hypothetical protein
LOC150538 protein.
Length = 151
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +3
Query: 207 GMAGNSFPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPK 386
G GN+ P+ +PV R + + + RTG+ P + + P
Sbjct: 27 GFPGNALHYSAPDLPTTPVGTRSSTHLAELMTAWAQRSAHCANTRTGIAPLPEPPHRAPF 86
Query: 387 ESAASPLMVPEPSKSPGLR---LQPVTVCCASC 476
+ A+PL +P +R P +CC C
Sbjct: 87 KELATPLTCKQPPTLKLIRTRVFHPKGLCCGRC 119
>BC101782-1|AAI01783.1| 151|Homo sapiens hypothetical protein
LOC150538 protein.
Length = 151
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +3
Query: 207 GMAGNSFPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPK 386
G GN+ P+ +PV R + + + RTG+ P + + P
Sbjct: 27 GFPGNALHYSAPDLPTTPVGTRSSTHLAELMTAWAQRSAHCANTRTGIAPLPEPPHRAPF 86
Query: 387 ESAASPLMVPEPSKSPGLR---LQPVTVCCASC 476
+ A+PL +P +R P +CC C
Sbjct: 87 KELATPLTCKQPPTLKLIRTRVFHPKGLCCGRC 119
>AK056625-1|BAB71234.1| 151|Homo sapiens protein ( Homo sapiens
cDNA FLJ32063 fis, clone OCBBF1000067. ).
Length = 151
Score = 32.3 bits (70), Expect = 1.4
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = +3
Query: 207 GMAGNSFPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPK 386
G GN+ P+ +PV R + + + RTG+ P + + P
Sbjct: 27 GFPGNALHYSAPDLPTTPVGTRSSTHLAELMTAWAQRSAHCANTRTGIAPLPEPPHRAPF 86
Query: 387 ESAASPLMVPEPSKSPGLR---LQPVTVCCASC 476
+ A+PL +P +R P +CC C
Sbjct: 87 KELATPLTCKQPPTLKLIRTRVFHPKGLCCGRC 119
>M33907-1|AAA52672.1| 261|Homo sapiens HLA-DQB1 protein.
Length = 261
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>M26042-1|AAA36270.1| 261|Homo sapiens protein ( Human MHC class II
DQ beta mRNA, complete cds. ).
Length = 261
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>L34100-1|AAC41968.1| 229|Homo sapiens MHC class II HLA-DQ-beta-1
protein.
Length = 229
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 66 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 125
Query: 376 MLELSW 359
+++ W
Sbjct: 126 QIKVRW 131
>L34099-1|AAC41967.1| 229|Homo sapiens MHC class II HLA-DQ-beta-1
protein.
Length = 229
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 66 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 125
Query: 376 MLELSW 359
+++ W
Sbjct: 126 QIKVRW 131
>AY656683-1|AAV71030.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375863-1|AAQ88037.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375862-1|AAQ88036.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375861-1|AAQ88035.1| 227|Homo sapiens MHC class II antigen
protein.
Length = 227
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375860-1|AAQ88034.1| 220|Homo sapiens MHC class II antigen
protein.
Length = 220
Score = 30.7 bits (66), Expect = 4.3
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI E V TVCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILEEDRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>X79198-1|CAA55790.1| 1938|Homo sapiens host cell factor protein.
Length = 1938
Score = 30.3 bits (65), Expect = 5.6
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 234 HLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKES--AASPL 407
HLP L+P P + +C+N L+ V L+P ++ P + A P+
Sbjct: 1614 HLPTEALAPADSLNDP---AIESNCLNELAGTVPSTVALLPSTATESLAPSNTFVAPQPV 1670
Query: 408 MVPEPSK 428
+V P+K
Sbjct: 1671 VVASPAK 1677
>U92032-1|AAB91991.1| 261|Homo sapiens MHC class II DQ-beta
protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>S49592-1|AAB24289.1| 476|Homo sapiens transcription factor E2F
like protein protein.
Length = 476
Score = 29.5 bits (63), Expect = 9.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 426 CSARAPSAGRRRTLSEACWNCPGRAPSP 343
C R P A R R L+EAC + P P P
Sbjct: 2 CRQRRPGAERDRALAEACRHGPAPPPPP 29
>M81141-1|AAA59772.1| 261|Homo sapiens lymphocyte antigen protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>M81140-1|AAA59771.1| 261|Homo sapiens lymphocyte antigen protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>L40179-1|AAC41976.1| 229|Homo sapiens MHC class II HLA-DQ-beta-1
protein.
Length = 229
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 66 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 125
Query: 376 MLELSW 359
+++ W
Sbjct: 126 QIKVRW 131
>L34095-1|AAC41963.1| 229|Homo sapiens MHC class II HLA-DQ-beta-1
protein.
Length = 229
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 66 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 125
Query: 376 MLELSW 359
+++ W
Sbjct: 126 QIKVRW 131
>K02405-1|AAA75521.1| 261|Homo sapiens MHC HLA-DC3-beta protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>J00198-1|AAA59788.1| 230|Homo sapiens HLA-DRB1 protein.
Length = 230
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 67 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 126
Query: 376 MLELSW 359
+++ W
Sbjct: 127 QIKVRW 132
>AY663407-1|AAU88012.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY663399-1|AAU87991.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375844-1|AAQ88018.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375843-1|AAQ88017.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY375842-1|AAQ88016.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AY333122-1|AAP93137.1| 183|Homo sapiens MHC class II HLA-DQ-beta
chain protein.
Length = 183
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 61 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 120
Query: 376 MLELSW 359
+++ W
Sbjct: 121 QIKVRW 126
>AL935026-3|CAI18446.1| 224|Homo sapiens major histocompatibility
complex, class II, DQ beta 1 protein.
Length = 224
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AL935026-2|CAI18445.1| 261|Homo sapiens major histocompatibility
complex, class II, DQ beta 1 protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
>AL731683-2|CAO03406.1| 261|Homo sapiens major histocompatibility
complex, class II, DQ beta 1 protein.
Length = 261
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 556 DIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEAADSFGS 377
DI K V VCR NY+ T Q+ + TVT R L + D + +
Sbjct: 98 DILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPA 157
Query: 376 MLELSW 359
+++ W
Sbjct: 158 QIKVRW 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,145,910
Number of Sequences: 237096
Number of extensions: 2042590
Number of successful extensions: 6498
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 6043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6490
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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