Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12d09
(614 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069144-1|AAL39289.1| 417|Drosophila melanogaster GH16063p pro... 153 1e-37
AE014296-753|AAF47833.2| 417|Drosophila melanogaster CG14993-PA... 153 1e-37
X78908-1|CAA55519.1| 86|Drosophila melanogaster shaker protein... 30 2.9
AE014298-688|AAF45991.2| 400|Drosophila melanogaster CG32770-PA... 29 5.0
L08811-1|AAA79329.2| 3503|Drosophila melanogaster adherin protein. 29 6.6
BT024409-1|ABC86471.1| 821|Drosophila melanogaster IP03940p pro... 29 6.6
AE014134-2890|ABI31323.1| 4106|Drosophila melanogaster CG15148-P... 29 6.6
AE014134-2889|ABI31324.1| 4061|Drosophila melanogaster CG15148-P... 29 6.6
AE014134-2888|AAF53638.2| 4019|Drosophila melanogaster CG15148-P... 29 6.6
AE014134-139|AAF51468.3| 3556|Drosophila melanogaster CG17941-PA... 29 6.6
>AY069144-1|AAL39289.1| 417|Drosophila melanogaster GH16063p
protein.
Length = 417
Score = 153 bits (372), Expect = 1e-37
Identities = 71/124 (57%), Positives = 89/124 (71%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI LEV ++ + +SN++++YWT QQ+A TVTGCNLRPGDL+ SGTISGE
Sbjct: 293 FDINLEVSLKPADQNEAL-ISKSNFKHLYWTPLQQIAHHTVTGCNLRPGDLMASGTISGE 351
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
DS+GS+LEL WKGTK + L G+ RKF+QD D V +RGHC GLRIGFG C G++L
Sbjct: 352 TPDSYGSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHC-EKNGLRIGFGECVGQVL 410
Query: 217 PAIP 206
PA P
Sbjct: 411 PAHP 414
>AE014296-753|AAF47833.2| 417|Drosophila melanogaster CG14993-PA
protein.
Length = 417
Score = 153 bits (372), Expect = 1e-37
Identities = 71/124 (57%), Positives = 89/124 (71%)
Frame = -2
Query: 577 FDIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGE 398
FDI LEV ++ + +SN++++YWT QQ+A TVTGCNLRPGDL+ SGTISGE
Sbjct: 293 FDINLEVSLKPADQNEAL-ISKSNFKHLYWTPLQQIAHHTVTGCNLRPGDLMASGTISGE 351
Query: 397 AADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLL 218
DS+GS+LEL WKGTK + L G+ RKF+QD D V +RGHC GLRIGFG C G++L
Sbjct: 352 TPDSYGSLLELCWKGTKTLELPGGKTRKFLQDFDEVIIRGHC-EKNGLRIGFGECVGQVL 410
Query: 217 PAIP 206
PA P
Sbjct: 411 PAHP 414
>X78908-1|CAA55519.1| 86|Drosophila melanogaster shaker protein
protein.
Length = 86
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 535 PVVTTVCRSNYRYMYWTVKQQLAQQT---VTGCNLRPGDLLGSGTISGEAADSFGSMLEL 365
PV V NY Y T ++++ Q VT C PG L+G ++S M++L
Sbjct: 24 PVPVIVSNFNYFYHRETDQEEMQSQNFNHVTSCPYLPGTLVGQHMKKSSLSESSSDMMDL 83
>AE014298-688|AAF45991.2| 400|Drosophila melanogaster CG32770-PA
protein.
Length = 400
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 433 GDLLGSGTISGEAADSFGSMLELSWKGTKPVRL 335
G L+G G++SG A + GSM++++ + P L
Sbjct: 261 GGLIGGGSVSGGAGGAGGSMMDVAHEEDTPTSL 293
>L08811-1|AAA79329.2| 3503|Drosophila melanogaster adherin protein.
Length = 3503
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 PSHLPNPILSPVALR------QWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKE 389
P+H+P P+L+ VA R + P +++++P+ + SP+ F +S M P
Sbjct: 3398 PTHIPPPLLTNVAPRAINLPMRLPPHLSLAPA--HLPRSPIGHEAS-GSFSTSSAMSPSF 3454
Query: 390 S-AASPLMVPEPSKSP 434
S + SPL PS SP
Sbjct: 3455 SPSLSPLATRSPSISP 3470
>BT024409-1|ABC86471.1| 821|Drosophila melanogaster IP03940p
protein.
Length = 821
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 PSHLPNPILSPVALR------QWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKE 389
P+H+P P+L+ VA R + P +++++P+ + SP+ F +S M P
Sbjct: 716 PTHIPPPLLTNVAPRAINLPMRLPPHLSLAPA--HLPRSPIGHEAS-GSFSTSSAMSPSF 772
Query: 390 S-AASPLMVPEPSKSP 434
S + SPL PS SP
Sbjct: 773 SPSLSPLATRSPSISP 788
>AE014134-2890|ABI31323.1| 4106|Drosophila melanogaster CG15148-PB,
isoform B protein.
Length = 4106
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 572 HQTGSGHSN*KVPGGDHRLPFELSVHVLDGETATGAADCHGLQP 441
H GSG G+ RLP++L + V G+T DC L+P
Sbjct: 3186 HLKGSGRPCELTTHGNDRLPYQLELAVRFGKTLL-VTDCEQLRP 3228
>AE014134-2889|ABI31324.1| 4061|Drosophila melanogaster CG15148-PC,
isoform C protein.
Length = 4061
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 572 HQTGSGHSN*KVPGGDHRLPFELSVHVLDGETATGAADCHGLQP 441
H GSG G+ RLP++L + V G+T DC L+P
Sbjct: 3141 HLKGSGRPCELTTHGNDRLPYQLELAVRFGKTLL-VTDCEQLRP 3183
>AE014134-2888|AAF53638.2| 4019|Drosophila melanogaster CG15148-PA,
isoform A protein.
Length = 4019
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -1
Query: 572 HQTGSGHSN*KVPGGDHRLPFELSVHVLDGETATGAADCHGLQP 441
H GSG G+ RLP++L + V G+T DC L+P
Sbjct: 3099 HLKGSGRPCELTTHGNDRLPYQLELAVRFGKTLL-VTDCEQLRP 3141
>AE014134-139|AAF51468.3| 3556|Drosophila melanogaster CG17941-PA
protein.
Length = 3556
Score = 28.7 bits (61), Expect = 6.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +3
Query: 228 PSHLPNPILSPVALR------QWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKE 389
P+H+P P+L+ VA R + P +++++P+ + SP+ F +S M P
Sbjct: 3451 PTHIPPPLLTNVAPRAINLPMRLPPHLSLAPA--HLPRSPIGHEAS-GSFSTSSAMSPSF 3507
Query: 390 S-AASPLMVPEPSKSP 434
S + SPL PS SP
Sbjct: 3508 SPSLSPLATRSPSISP 3523
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,745,807
Number of Sequences: 53049
Number of extensions: 637418
Number of successful extensions: 1942
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1937
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2517878700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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