Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d09
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...   146   1e-35
Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical pr...    33   0.21 
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    30   1.5  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    29   2.6  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   2.6  
U58761-5|ABC71835.1|  148|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical pr...    28   6.1  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   6.1  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   6.1  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   6.1  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   6.1  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   6.1  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   6.1  

>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score =  146 bits (354), Expect = 1e-35
 Identities = 69/121 (57%), Positives = 87/121 (71%)
 Frame = -2

Query: 574 DIKLEVDIQTEKSPVVTTVCRSNYRYMYWTVKQQLAQQTVTGCNLRPGDLLGSGTISGEA 395
           DI L V I+ E   V   VC++N++++YWT+KQQLA  TV GCNLR GDLLGSGT+SG  
Sbjct: 298 DINLAVSIRPEGDAVDHIVCKTNFKHLYWTLKQQLAHHTVNGCNLRAGDLLGSGTVSGPE 357

Query: 394 ADSFGSMLELSWKGTKPVRLSTGEERKFIQDGDTVTLRGHCLNATGLRIGFGRCEGKLLP 215
             ++GSMLELSW+G K V + + E RKF++DGD V L G C    G+RIGFG C GK+LP
Sbjct: 358 EGAYGSMLELSWRGAKEVPVGS-EIRKFLKDGDEVNLSGVC-EKNGVRIGFGECRGKVLP 415

Query: 214 A 212
           A
Sbjct: 416 A 416


>Z92790-5|CAI79208.1|  169|Caenorhabditis elegans Hypothetical
           protein H03G16.6 protein.
          Length = 169

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 327 PVERRTGLVPFQDNSNMLPKESAASPLMVPEPSKSPGLRLQPVTVCCASCCFTV 488
           P  R+  L+P    S+  P  SA +P+ VPE  K    R   +  CC   C T+
Sbjct: 101 PKVRKEALMP---TSSPTPGTSAYTPITVPEQQKRAPTRTAKILSCCRIGCITL 151


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 24/79 (30%), Positives = 32/79 (40%)
 Frame = +3

Query: 219 NSFPSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKESAA 398
           NS P   PNP   P A R     +   P   N + +P +  TGL P         +E   
Sbjct: 33  NSVPVQNPNPNQIPPAPRPIVNQIQY-PKPTNPVQNPNKLSTGLPPMTMMLPPTVQEPLP 91

Query: 399 SPLMVPEPSKSPGLRLQPV 455
           +P+  P   + PG  L PV
Sbjct: 92  TPVKTPPLPRPPG-NLNPV 109


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +3

Query: 228  PSHLP-NPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKE---SA 395
            P + P +P  SP +    P + T +P+     SSP    T       + +  P     S 
Sbjct: 1742 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1801

Query: 396  ASPLMVPEPSKSPGLRLQ 449
             SP   P PS+ PG   Q
Sbjct: 1802 TSPTYTPSPSEQPGTSAQ 1819


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
 Frame = +3

Query: 228  PSHLP-NPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTGLVPFQDNSNMLPKE---SA 395
            P + P +P  SP +    P + T +P+     SSP    T       + +  P     S 
Sbjct: 1749 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1808

Query: 396  ASPLMVPEPSKSPGLRLQ 449
             SP   P PS+ PG   Q
Sbjct: 1809 TSPTYTPSPSEQPGTSAQ 1826


>U58761-5|ABC71835.1|  148|Caenorhabditis elegans Hypothetical
           protein C01F1.3b protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 228 PSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTG 347
           P +L + I+    L   P ++T+ P CMN + + +E+R+G
Sbjct: 27  PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 66


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 228 PSHLPNPILSPVALRQWPRNVTVSPSCMNFLSSPVERRTG 347
           P +L + I+    L   P ++T+ P CMN + + +E+R+G
Sbjct: 510 PRNLLSKIIKYKELFDIPVSLTILPDCMNAMCNLMEQRSG 549


>Z35602-2|CAA84671.3|  824|Caenorhabditis elegans Hypothetical
           protein R13G10.2 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 372 NMLPKESAASPLMVPEPSKSPGLRLQPVTVCCASCCFTVQYMYR*FERQTVV 527
           NML +E     L   + + S G RL     CC S CF+V +  + +E +  +
Sbjct: 55  NMLMEEECVLQLGNCKKTASYGHRLSKTEACCPS-CFSVAFRGKDYENEFTI 105


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 248 APEGIGGYECPAPMVCMQLNLNA 270


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 248 APEGIGGYECPAPMVCMQLNLNA 270


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 306 APEGIGGYECPAPMVCMQLNLNA 328


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 306 APEGIGGYECPAPMVCMQLNLNA 328


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 306 APEGIGGYECPAPMVCMQLNLNA 328


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 526 SPPGTFQFECPLPV*CRKLNLSS 594
           +P G   +ECP P+ C +LNL++
Sbjct: 278 APEGIGGYECPAPMVCMQLNLNA 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,672
Number of Sequences: 27780
Number of extensions: 308372
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)