Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d09
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.59 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
 Frame = +2

Query: 362  GQFQHASERVRRLPADGARAEQVSRSEVA----------ARDSLLRQLLFHRPIHVP 502
            G    +S+R+R+LP      ++V R++              D++  QL+ H P H P
Sbjct: 1314 GAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVENTFGHDTVTHQLIVHAPPHSP 1370


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 595 TTINSIFDIKLEVDIQTEKSPVVTTVC-RSNYRYMYWTVKQ 476
           T  N+++++ L  D+Q +    + T C ++N    Y  +K+
Sbjct: 312 TMSNALYELALNQDVQKKLREEINTFCPKNNKELKYDDIKE 352


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 523 WSPPGTFQFECPLPV*CRKLNLSSCF 600
           W+PP  F+  C + V     +  +CF
Sbjct: 135 WTPPAIFKSSCEIDVRYFPFDQQTCF 160


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 254 ESGRVEAVAAQCDRVSVLYEFPL 322
           ESG   A +A C  +++  +FPL
Sbjct: 190 ESGNYSADSAMCAMLTIYADFPL 212


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 230 GETITGHTFPRMKYIYRQVKG 168
           GETI   T+P +  ++  + G
Sbjct: 479 GETIEAKTYPEVTMLFSDIVG 499


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 411 VPEPSKSPGL-RLQPVTVCCA 470
           +PEPSK+P +   Q   V C+
Sbjct: 373 IPEPSKNPAMGHWQMSCVACS 393


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 251 NRVREMRGETITGHTFPRMKYIYRQVKGLFNPLTVM 144
           NR+RE++G      +  R  Y+   + G    LT +
Sbjct: 852 NRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFL 887


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +1

Query: 484 PSNTCTDSSNGKRWSPPGTFQFECPLPV 567
           P+N    ++    + PPG F+  C + +
Sbjct: 125 PTNVVVKNNGTCLYVPPGIFKSTCKIDI 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,442
Number of Sequences: 438
Number of extensions: 3964
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)