Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d07
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    28   0.83 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   5.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    25   7.7  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.7  

>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 312 YKIFVFGHGLPNIQYITQAHLH--CALDIITKPLFFFF*YC 196
           YK+ V   G+PN+ Y  Q  LH    +D++   L   F +C
Sbjct: 59  YKLLVGNAGIPNVYYFGQEGLHNILVIDLLGPSLEDLFEWC 99


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 395 FVLHCWFFFLVK*CIFYGTTVSFTYT 472
           F L C++  L   C+ Y T V+ T T
Sbjct: 142 FFLECFYLNLYSICVLYSTFVAITKT 167


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 90   IHTRSEPAKQIDRLSV*NRHVDVVAIRDIFTNNSQDN 200
            + +  E A Q  RL++ N H + V  R +  NN  DN
Sbjct: 1373 LKSEEEEASQHRRLNLVNNHKEHVLERAMSENNKMDN 1409


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 216 FFFF*YCLESYL*KYPE*QPHLHVDFKPTNDQFVWLVH 103
           +FFF   +  Y    P  Q  +   F P N++  W++H
Sbjct: 131 YFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWILH 168


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = -2

Query: 350 ADTALPKTYNYVGTKFS---FSDTVSLT 276
           ADTA+P  Y+Y  TK S   +SD+ ++T
Sbjct: 914 ADTAVPGVYHYEFTKLSDSLYSDSDAVT 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,797
Number of Sequences: 5004
Number of extensions: 49672
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)