Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d07
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141           28   4.5  
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    23   6.5  

>04_01_0455 - 5889132-5889462,5889583-5889611,5890112-5890141
          Length = 129

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 185 ICENIPNSNHIYMSILNRQTINLF 114
           ICE IP S H+   I++ +  NLF
Sbjct: 8   ICETIPPSEHLLSKIMSARKANLF 31


>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 155 CGCYSGYFHK*LSRQY 202
           CG Y+G F + L R+Y
Sbjct: 148 CGTYTGIFRQELQRKY 163



 Score = 23.0 bits (47), Expect(2) = 6.5
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
 Frame = +2

Query: 269 YWMLGRPCPKTKILYLHSCKFWGARCQ---RRAGRSLTRASAV 388
           Y +   PC    +   H C  W A CQ    R GR L   SAV
Sbjct: 163 YHLKNSPCDPCMV---HCCLHWCANCQEHRERTGR-LAENSAV 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,977
Number of Sequences: 37544
Number of extensions: 282213
Number of successful extensions: 561
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)