Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d07
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    28   4.1  
U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna synt...    27   7.1  
Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical...    27   9.4  

>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 248 CKCAWVIYWMLGRPC-PKTKILYLHSCKFWGARCQ 349
           C+C   + WM+   C P T+    ++C+ W A+C+
Sbjct: 141 CECLH-LQWMMNYECYPGTRAPAYNNCQRWAAKCR 174


>U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical
           protein R05H11.1 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 412 VLFFSKVMYFL-WNDRFIY 465
           +LF+ K +YFL W DRF Y
Sbjct: 360 ILFYGKKLYFLVWKDRFPY 378


>U53155-2|AAC48266.2|  918|Caenorhabditis elegans Valyl trna
           synthetase protein 1 protein.
          Length = 918

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 299 TKILYLHSCKFWGARCQRRAGRSLTRASAVFDF 397
           T+  ++  C  WG +C     + LTR  A  D+
Sbjct: 69  TREEFVKECHLWGEKCSSEIRQQLTRMGASLDW 101


>Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical
           protein W09C5.2 protein.
          Length = 459

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 327 LQLCRYKIFVFGHGLPNIQYITQAHLHCALDII 229
           + LC Y I   GHGL  I      HLH  ++I+
Sbjct: 158 VHLCLYFIEPSGHGLKPIDIELMKHLHGRVNIV 190


>AL023828-27|CAI46622.1|  308|Caenorhabditis elegans Hypothetical
           protein Y17G7B.23 protein.
          Length = 308

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 320 SCKFWGARCQRRAGRSLTRASAVFDFVLHCWFFFLVK*CIFYG 448
           +CK  G  C + AG+   + S VF+   HC+     K C   G
Sbjct: 183 TCK--GVYCTKTAGKMNGKCSKVFEICAHCYCKTSAKPCEISG 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,859,923
Number of Sequences: 27780
Number of extensions: 283205
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)