Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d05
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   1.7  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   5.1  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   5.1  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 414 ERRPQENVPGSERQRLKLDRRVSATLHRRPKPRNDY*SEP*EDTGQDHCQVRP 256
           +R  QE +   ERQ+LKL+   +  + +R  P  ++ ++  ++  +   + RP
Sbjct: 158 QRLRQEQILNKERQQLKLNNFFTKGVEKRIAPNENFVADKTDELNEFEKEFRP 210


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 141 PICRKVKRIFLHFFPCNFFY 82
           P C+KV R+FL FFP N+ +
Sbjct: 227 PDCQKV-RVFLAFFPTNWCF 245


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 487 LTFFALIASIMFLVPSDKSEVGARSFLVPRVM 582
           L   A + ++M +VP+    +G RS   P+VM
Sbjct: 4   LKLVASVLALMTIVPAQAGLIGKRSVFKPKVM 35


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 298 TLRRHRAGPLPSATSAHS*WTRFPNPSTTRQS 203
           T+R   A P P  +S+ S W   P+PS+T  S
Sbjct: 193 TIRILSAIPSPLPSSSTSSWADEPSPSSTETS 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,655
Number of Sequences: 5004
Number of extensions: 53084
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)