Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d05
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351...    31   0.99 
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    30   1.7  
03_05_0871 + 28396964-28399843                                         29   2.3  
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202...    29   2.3  
12_01_0541 + 4251931-4254141                                           28   5.3  
09_06_0313 + 22240971-22242176                                         28   7.0  
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468...    27   9.2  
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905...    27   9.2  

>06_02_0338 -
           14723277-14723444,14724564-14724836,14735044-14735160,
           14735276-14735593
          Length = 291

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTR---NDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLF 453
           D + +A+ G DAVV   G R   +  AP    + GT N+++A R   V T    +S+ L 
Sbjct: 116 DKLVDAIRGADAVVCATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGV-TRFILVSSILV 174

Query: 452 YEQ---EKVPPIFVNLN------EDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEV 300
                 + + P +  LN          +  + ++ SG+N+    P   T+ P    I+ +
Sbjct: 175 NGAAMGQLLNPAYTVLNLFGLVLVAKLQAEKHIRSSGINYTIIRPGGLTEQPPTGNIV-M 233

Query: 299 NPEKTPGR-TIAKCDLGTFLVDAL--SEPKYYKAV 204
            PE T    +I++  +    V+AL   E   YK V
Sbjct: 234 EPEDTLYEGSISRQQVAEVAVEALLCREESSYKVV 268


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 159 VISLIYPICRKVKRIFLHFFPCNFFYXRSNI 67
           +ISLI+  C   K+I LH  PC  F    N+
Sbjct: 658 MISLIFEECHNAKKISLHRLPCTGFQYLINL 688


>03_05_0871 + 28396964-28399843
          Length = 959

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +2

Query: 89  KLQGKKCKNILLTLRHIGYIKLITTIGSFIL 181
           KLQG+  +N+LL   H   IK IT  GS+I+
Sbjct: 815 KLQGRVHRNLLLEDPHFSCIKSITLSGSWIV 845


>02_05_0140 -
           26218828-26219759,26219885-26220002,26220089-26220278,
           26220380-26220514,26220617-26220714,26221697-26221866,
           26222586-26222961
          Length = 672

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 343 GGNAA--IQFKPLSFRAWNILLWSSFKLTKIGGTFSCS 450
           GGNA   +QF     +AW    +  F LT +G    CS
Sbjct: 240 GGNACGFVQFPTFGLKAWKQSFFFDFSLTYVGAGMICS 277


>12_01_0541 + 4251931-4254141
          Length = 736

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 376 SFRAWNILLWSSFKLTKIGGTFSCS*NKNADKQADTVLTFFALIASIMFLVPS 534
           SFR   +++W+ F L    G  +CS +  AD+QA T+++    +  +M L+ S
Sbjct: 85  SFRNDMVVVWACFLLGCADGIAACSLD-GADQQARTMISQATQVFYVMLLLIS 136


>09_06_0313 + 22240971-22242176
          Length = 401

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = -3

Query: 264 VRPRHIPSGRAFRTQV---LQGSHWHLQCAQRMKEPIV 160
           +RP HIP   A R         +HWH  CA   + P V
Sbjct: 7   LRPAHIPRSTAVRPPCATPFSRAHWHATCAAIRRVPRV 44


>08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,
            4683834-4684204,4684290-4684835,4684927-4685027,
            4685117-4685933,4686025-4686213,4686313-4686384,
            4686477-4686587,4686647-4686652,4686694-4686794,
            4687714-4687813,4687891-4687986,4688157-4688273,
            4688367-4688492,4688566-4688619,4688745-4688992,
            4689087-4689195,4689284-4689583,4689799-4689963
          Length = 2240

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 479  SACLSAFLFYEQEKVPPIFVNLNEDHKRMF 390
            +A L  F+F+E++K+P      N D KR F
Sbjct: 1904 TAHLVRFIFFERQKLPHEIFKHNVDEKRQF 1933


>04_04_0293 -
           24189344-24189350,24189804-24190026,24190411-24190529,
           24191331-24191578
          Length = 198

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -2

Query: 280 AGPLPSATSAHS*WTRFPNPSTTRQSLASAMCPKNEGTYSRY*FNISNMS 131
           AGP P AT+  +  ++ P+P+       S + P    +YS     +SN S
Sbjct: 46  AGPAPKATATAAPSSKAPSPAAPSPEAPSPVAPAARPSYSSVLRLVSNNS 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,646,887
Number of Sequences: 37544
Number of extensions: 361538
Number of successful extensions: 857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)