Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d05
         (626 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094929-1|AAM11282.1|  204|Drosophila melanogaster RH49505p pro...   134   7e-32
AE014297-1036|AAF54447.1|  204|Drosophila melanogaster CG9471-PA...   133   2e-31
AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-P...    30   2.9  
AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p pro...    29   6.8  
AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB...    29   6.8  
AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA...    29   6.8  

>AY094929-1|AAM11282.1|  204|Drosophila melanogaster RH49505p
           protein.
          Length = 204

 Score =  134 bits (325), Expect = 7e-32
 Identities = 63/148 (42%), Positives = 91/148 (61%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQ 444
           + V   +EG DAV + LGTRN L  T++LS GT+N+I AM+   +   S  +S+FL    
Sbjct: 57  EDVQRVIEGVDAVAVILGTRNKLEATTELSRGTENLIKAMKEAKLTKFSIVMSSFLLRPL 116

Query: 443 EKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTPGRTIAK 264
            +VP +F  LNE+H+RM    K   L+WIA  PPH  D+P+      V  E+ PGR ++K
Sbjct: 117 NEVPTVFHRLNEEHQRMLDLTKACDLDWIAILPPHIADEPA--TAYTVLHEEAPGRLVSK 174

Query: 263 CDLGTFLVDALSEPKYYKAVIGICNVPK 180
            DLG F++D+L +P++Y+ V GI   PK
Sbjct: 175 YDLGKFIIDSLEQPEHYRKVCGIGKSPK 202


>AE014297-1036|AAF54447.1|  204|Drosophila melanogaster CG9471-PA
           protein.
          Length = 204

 Score =  133 bits (322), Expect = 2e-31
 Identities = 62/148 (41%), Positives = 91/148 (61%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQ 444
           + V   +EG DAV + LGTRN L  T++LS GT+N+I AM+   +   S  +S+FL    
Sbjct: 57  EDVQRVIEGVDAVAVILGTRNKLEATTELSRGTENLIKAMKEAKLTKFSIVMSSFLLRPL 116

Query: 443 EKVPPIFVNLNEDHKRMFQALKDSGLNWIAAFPPHFTDDPSREMIIEVNPEKTPGRTIAK 264
            +VP +F  LNE+H+RM    K   L+WIA  PPH  D+P+      V  ++ PGR ++K
Sbjct: 117 NEVPTVFHRLNEEHQRMLDLTKACDLDWIAILPPHIADEPA--TAYTVLHDEAPGRLVSK 174

Query: 263 CDLGTFLVDALSEPKYYKAVIGICNVPK 180
            DLG F++D+L +P++Y+ V GI   PK
Sbjct: 175 YDLGKFIIDSLEQPEHYRKVCGIGKSPK 202


>AE014297-3155|AAF55996.2| 2059|Drosophila melanogaster CG12499-PA
           protein.
          Length = 2059

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 303 FNNHFSAWVVCEVWRKRGDPI*AAVFQSLEHSLVVFVQIDEDRRHLFLFIK 455
           ++N+ +A  V E  +K G+ +    F  L H LV F  I+     L++FIK
Sbjct: 556 YSNYMNAIAVREQSKKAGNSLRKFKFDLLNHLLVHFPTIESILYSLYMFIK 606


>AY119584-1|AAM50238.1|  534|Drosophila melanogaster LD14064p
           protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQ 444
           + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y  
Sbjct: 14  ERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYYSG 70

Query: 443 EKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 354
           E V P   IF+  N +     Q L   G  W+A
Sbjct: 71  ELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


>AE014296-1373|AAS65055.1|  534|Drosophila melanogaster CG7942-PB,
           isoform B protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQ 444
           + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y  
Sbjct: 14  ERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYYSG 70

Query: 443 EKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 354
           E V P   IF+  N +     Q L   G  W+A
Sbjct: 71  ELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


>AE014296-1372|AAF50486.1|  534|Drosophila melanogaster CG7942-PA,
           isoform A protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
 Frame = -1

Query: 623 DSVHEAVEGTDAVVITLGTRNDLAPTSDLSEGTKNIIDAMRAKNVKTVSACLSAFLFYEQ 444
           + +++ +EG + V    GT+ DL       + T+N+ D       K      S + +Y  
Sbjct: 14  ERIYDTIEGIEKVG---GTKIDLLLCCGDFQSTRNLEDLQTMAVPKKYLDMCSFYKYYSG 70

Query: 443 EKVPP---IFVNLNEDHKRMFQALKDSGLNWIA 354
           E V P   IF+  N +     Q L   G  W+A
Sbjct: 71  ELVAPVLTIFIGGNHEASNYLQELPYGG--WVA 101


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,750,395
Number of Sequences: 53049
Number of extensions: 605922
Number of successful extensions: 1784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)