Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d05
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY305844-1|AAR11988.1|  423|Caenorhabditis elegans nuclear recep...    27   8.3  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   8.3  
AF273828-1|AAG15177.1|  422|Caenorhabditis elegans nuclear recep...    27   8.3  
AF273827-1|AAG15176.1|  421|Caenorhabditis elegans nuclear recep...    27   8.3  
AF273826-1|AAG15175.1|  419|Caenorhabditis elegans nuclear recep...    27   8.3  
AC024771-7|AAK70663.4|  407|Caenorhabditis elegans Nuclear hormo...    27   8.3  

>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 244 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 354
           R+   +HLA V+PGVF+   ++ I++L SS   C  N+
Sbjct: 13  RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 95  VIFSIXDQIFKCYPKCSSYCHLLR 24
           V+F I   IF C+  CS YC +L+
Sbjct: 167 VMFGISYLIFSCHENCSIYCDILK 190


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 607  PSKEQTLSSSP*GLGTTWRRLRIYLKE 527
            PSK  T+   P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192


>AY305844-1|AAR11988.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/46 (21%), Positives = 29/46 (63%)
 Frame = -3

Query: 240 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 103
           G++ + +V++   ++L+CA+R++EP + ++ +  +   ++R    F
Sbjct: 350 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 395


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 607  PSKEQTLSSSP*GLGTTWRRLRIYLKE 527
            PSK  T+   P G G T + +R+YL E
Sbjct: 1166 PSKTITIRKGPFGFGFTLKSVRVYLGE 1192


>AF273828-1|AAG15177.1|  422|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/46 (21%), Positives = 29/46 (63%)
 Frame = -3

Query: 240 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 103
           G++ + +V++   ++L+CA+R++EP + ++ +  +   ++R    F
Sbjct: 349 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 394


>AF273827-1|AAG15176.1|  421|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/46 (21%), Positives = 29/46 (63%)
 Frame = -3

Query: 240 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 103
           G++ + +V++   ++L+CA+R++EP + ++ +  +   ++R    F
Sbjct: 348 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 393


>AF273826-1|AAG15175.1|  419|Caenorhabditis elegans nuclear receptor
           NHR-86 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/46 (21%), Positives = 29/46 (63%)
 Frame = -3

Query: 240 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 103
           G++ + +V++   ++L+CA+R++EP + ++ +  +   ++R    F
Sbjct: 346 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 391


>AC024771-7|AAK70663.4|  407|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 86 protein.
          Length = 407

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/46 (21%), Positives = 29/46 (63%)
 Frame = -3

Query: 240 GRAFRTQVLQGSHWHLQCAQRMKEPIVVISLIYPICRKVKRIFLHF 103
           G++ + +V++   ++L+CA+R++EP + ++ +  +   ++R    F
Sbjct: 334 GKSVKDRVMKELAFYLRCAKRLEEPSLRVASLLTLLPALQRCVRRF 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,066
Number of Sequences: 27780
Number of extensions: 314287
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)