Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12d03
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    30   1.3  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    29   1.7  
AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +2

Query: 209 QKYFTFFLLTFYICILDXLDNIFFNKNLSEIILQ*SLQIKNT 334
           QK FTFF++ F++ ++D    + F+  L  + L+  LQ+KN+
Sbjct: 183 QKAFTFFIIIFFVNLVD----VIFDLILLRMNLKLKLQLKNS 220


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +2

Query: 167 FFTITYVLKLNAILQ-KYFTFFLLTFY---ICILDXLDNIFFNKNLS 295
           F ++ + +K+N ++  ++++FF  TF    I ++D +  + FN+ LS
Sbjct: 238 FISVAFTMKMNMLIDHRFYSFFSQTFLWQSIHVIDGIIMLLFNEGLS 284


>AC006743-1|AAF60503.1|  255|Caenorhabditis elegans Hypothetical
           protein Y38C1BA.1 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 212 KYFTFFLLTFYICILDXLDNIFFN 283
           +Y T FLLTF   +LD + ++F N
Sbjct: 10  EYGTHFLLTFQFIVLDGIRDMFMN 33


>Z81463-1|CAB03850.1|  342|Caenorhabditis elegans Hypothetical
           protein C06B8.1 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 332 TLTKXILXXSSHFKXKSLNS*NISQSPVRYYXXVHFWDEF 451
           T TK I   S+     SL++  I +S +  +  VH W EF
Sbjct: 76  TSTKAISCISTESTSNSLSARIIPRSSLNIHGAVHLWQEF 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,188
Number of Sequences: 27780
Number of extensions: 157795
Number of successful extensions: 306
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)