Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c24
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC050537-1|AAH50537.2| 463|Homo sapiens FLJ20160 protein protein. 53 9e-07
AK127176-1|BAC86869.1| 791|Homo sapiens protein ( Homo sapiens ... 53 9e-07
AK000167-1|BAA90987.1| 463|Homo sapiens protein ( Homo sapiens ... 53 9e-07
AC093388-1|AAY24173.1| 463|Homo sapiens unknown protein. 53 9e-07
AK131080-1|BAC85130.1| 563|Homo sapiens FLJ00279 protein protein. 32 1.4
BC117221-1|AAI17222.1| 1205|Homo sapiens SEC31 homolog A (S. cer... 32 1.9
BC084583-1|AAH84583.1| 1106|Homo sapiens SEC31 homolog A (S. cer... 32 1.9
AY137583-1|AAN15221.1| 508|Homo sapiens protein-transport prote... 32 1.9
AK125897-1|BAC86336.1| 969|Homo sapiens protein ( Homo sapiens ... 32 1.9
AF139184-1|AAF67836.1| 1220|Homo sapiens Sec31 protein protein. 32 1.9
AB020712-1|BAA74928.2| 1229|Homo sapiens KIAA0905 protein protein. 32 1.9
AB018359-1|BAA84924.1| 1220|Homo sapiens ABP130 protein. 32 1.9
AB018358-1|BAA84923.1| 1181|Homo sapiens ABP125 protein. 32 1.9
>BC050537-1|AAH50537.2| 463|Homo sapiens FLJ20160 protein protein.
Length = 463
Score = 52.8 bits (121), Expect = 9e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = -3
Query: 617 FFCSGKIIKRWGYGTTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTYALCYATIV 438
+F S K+I+ G+ L L C R IS++ N W ++ +E ++QG T+A +A +
Sbjct: 169 YFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPME-VLQGVTHAAIWAACI 227
Query: 437 GYAAHVAPDGYSATVQGIVAGMDDGVG 357
Y + P + QGI+ G+ G+G
Sbjct: 228 SYLSAAVPPELRTSAQGILQGLHLGLG 254
>AK127176-1|BAC86869.1| 791|Homo sapiens protein ( Homo sapiens
cDNA FLJ45241 fis, clone BRCOC2006164. ).
Length = 791
Score = 52.8 bits (121), Expect = 9e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = -3
Query: 617 FFCSGKIIKRWGYGTTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTYALCYATIV 438
+F S K+I+ G+ L L C R IS++ N W ++ +E ++QG T+A +A +
Sbjct: 497 YFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPME-VLQGVTHAAIWAACI 555
Query: 437 GYAAHVAPDGYSATVQGIVAGMDDGVG 357
Y + P + QGI+ G+ G+G
Sbjct: 556 SYLSAAVPPELRTSAQGILQGLHLGLG 582
>AK000167-1|BAA90987.1| 463|Homo sapiens protein ( Homo sapiens
cDNA FLJ20160 fis, clone COL09072. ).
Length = 463
Score = 52.8 bits (121), Expect = 9e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = -3
Query: 617 FFCSGKIIKRWGYGTTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTYALCYATIV 438
+F S K+I+ G+ L L C R IS++ N W ++ +E ++QG T+A +A +
Sbjct: 169 YFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPME-VLQGVTHAAIWAACI 227
Query: 437 GYAAHVAPDGYSATVQGIVAGMDDGVG 357
Y + P + QGI+ G+ G+G
Sbjct: 228 SYLSAAVPPELRTSAQGILQGLHLGLG 254
>AC093388-1|AAY24173.1| 463|Homo sapiens unknown protein.
Length = 463
Score = 52.8 bits (121), Expect = 9e-07
Identities = 27/87 (31%), Positives = 46/87 (52%)
Frame = -3
Query: 617 FFCSGKIIKRWGYGTTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTYALCYATIV 438
+F S K+I+ G+ L L C R IS++ N W ++ +E ++QG T+A +A +
Sbjct: 169 YFFSHKLIELIGHIRVLYIGLACNTARYIYISYLENAWTVLPME-VLQGVTHAAIWAACI 227
Query: 437 GYAAHVAPDGYSATVQGIVAGMDDGVG 357
Y + P + QGI+ G+ G+G
Sbjct: 228 SYLSAAVPPELRTSAQGILQGLHLGLG 254
>AK131080-1|BAC85130.1| 563|Homo sapiens FLJ00279 protein protein.
Length = 563
Score = 32.3 bits (70), Expect = 1.4
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 439 SGTRLMWPRTVT-RRLSRA*WPAWTTAWVSPWARC*ADNFTVRWAVDIPSACSAYWR*WR 263
SGTR WP T + RR R +WTT W W + W S S+ WR R
Sbjct: 2 SGTRRRWPPTTSWRRPRRGCSRSWTTCW---WTWTTSARARATWRRSRRSLTSS-WRRRR 57
Query: 262 PSSTPRCSWNSIGL 221
P S P ++ GL
Sbjct: 58 P-SLPSMQRSATGL 70
>BC117221-1|AAI17222.1| 1205|Homo sapiens SEC31 homolog A (S.
cerevisiae) protein.
Length = 1205
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 777 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 808
>BC084583-1|AAH84583.1| 1106|Homo sapiens SEC31 homolog A (S.
cerevisiae) protein.
Length = 1106
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 777 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 808
>AY137583-1|AAN15221.1| 508|Homo sapiens protein-transport protein
SEC31 variant protein.
Length = 508
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 179 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 210
>AK125897-1|BAC86336.1| 969|Homo sapiens protein ( Homo sapiens
cDNA FLJ43909 fis, clone TESTI4010831. ).
Length = 969
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 510 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 541
>AF139184-1|AAF67836.1| 1220|Homo sapiens Sec31 protein protein.
Length = 1220
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 777 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 808
>AB020712-1|BAA74928.2| 1229|Homo sapiens KIAA0905 protein protein.
Length = 1229
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 786 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 817
>AB018359-1|BAA84924.1| 1220|Homo sapiens ABP130 protein.
Length = 1220
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 777 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 808
>AB018358-1|BAA84923.1| 1181|Homo sapiens ABP125 protein.
Length = 1181
Score = 31.9 bits (69), Expect = 1.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 435 PDYSSVAKGICRALHNPLYQHQLPRIPYERYQ 530
P+ + +CRA P+ H+ P+IPYE+ Q
Sbjct: 738 PNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQ 769
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,049,111
Number of Sequences: 237096
Number of extensions: 1656518
Number of successful extensions: 5997
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5995
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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