Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c23
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    26   5.1  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   6.8  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   9.0  

>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 622 YEGMEIAQYEKRVIRILYCKGD 557
           Y  +++++YEK V+ IL   GD
Sbjct: 79  YNAIQVSEYEKGVLAILQLNGD 100


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 341 PTLQTETHCCFTSEIGRVVVPTRADSQEVLPVKTITSKNYNYTTSIT 481
           PT  T T   +   +   +  T ++   +  V+  T+ NY YTT  T
Sbjct: 200 PTTTTTTTVGYPGSVTTTLTGTPSNGTVIDTVEVPTTTNYGYTTITT 246



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 344 TLQTETHCCFTSEIGRVVVPTRADS--QEVLPVKTITSKNYNYTTSIT 481
           T+ T T   ++  +   +  + ++S   E + V T TS NY YTT  T
Sbjct: 669 TVTTTTTVGYSGSVTTTLTGSGSNSIVTETVDVPTTTSVNYGYTTITT 716


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 215 GG*SHSPPGVKWLLEPIDIY 274
           GG  H P  V WLL P DIY
Sbjct: 235 GGPLHDPNTVMWLLRP-DIY 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,448
Number of Sequences: 5004
Number of extensions: 46556
Number of successful extensions: 75
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)