Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c22
(363 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 204 2e-54
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 204 2e-54
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 152 1e-38
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 152 1e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 152 1e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 92 2e-20
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 7e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 2e-05
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 41 7e-05
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 0.90
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 2.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 2.7
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 3.6
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 4.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 4.8
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 4.8
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 6.3
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 6.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 6.3
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 24 8.3
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 204 bits (499), Expect = 2e-54
Identities = 97/106 (91%), Positives = 101/106 (95%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 139 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPR 2
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PR
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPR 106
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 204 bits (499), Expect = 2e-54
Identities = 97/106 (91%), Positives = 101/106 (95%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 139 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPR 2
IQKESTLHLVLRLRGG IEPSL+ LA KYNCEK ICRKCYARL PR
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPR 106
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 152 bits (369), Expect = 1e-38
Identities = 73/76 (96%), Positives = 76/76 (100%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 139 IQKESTLHLVLRLRGG 92
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 92.3 bits (219), Expect = 2e-20
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 139 IQKESTLHLVLRLRGGT 89
++ S LHLVL LRGG+
Sbjct: 61 LEGGSVLHLVLALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 7e-06
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = -3
Query: 289 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 113
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 112 VLRLRGGTIEP 80
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = -3
Query: 319 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 140
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 139 IQKESTLHLVLRL 101
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 40.7 bits (91), Expect = 7e-05
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = -3
Query: 292 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 119
GK LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 0.90
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -3
Query: 316 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 143
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 142 NIQKESTLHLVLRLRGGT 89
+ T HLV+ + T
Sbjct: 65 DATDLVTFHLVIAVFNST 82
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 361 FLFLSKHVFHRSNTMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEG-IPPDQ 200
FL+ + FH I + + KT+T+E++ + + + KI E I PDQ
Sbjct: 274 FLYDQLNKFHDQEVQDIMKQNIDLKTLTMELQRA--VAGYEKKISGLESRIKPDQ 326
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 239 FDIFDSVGSFHLQCNGLPRKGFDEYLHCVAPMKNV 343
F ++S+G + L C + FDEYL+ A ++NV
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 245 IFDSVGSFHLQCNGLPRKGFDEYL 316
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 4.8
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +3
Query: 234 LALTFSIVSEASTSNVMVFPVRVLTNICIVLLL 332
L TF++ STS++++ R L N+ I++++
Sbjct: 4 LDYTFNVSDATSTSSIIIVSRRELANLRIMVII 36
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 352 LSKHVFHRSNTMQIFVKTLTGKTITLE-VEASDTIENVKAKIQDKEGIPP 206
LSK VF+ + + T+ G +++E V+ ++ N + + +PP
Sbjct: 346 LSKRVFYSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPP 395
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 4.8
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Frame = -3
Query: 298 LTGKTITLEVEASDTIENVKAKIQDKEGIP---PDQQRLIFAGKQLEDGRTLSDYNIQKE 128
L G T EV T+ + + +G P P + I A +G TL+ YN
Sbjct: 94 LKGPERTSEVSLPQTVNLSEISNNNDKGQPTNTPPVRSTIVAPSLYSEGSTLNHYNNGSH 153
Query: 127 STLH 116
LH
Sbjct: 154 QVLH 157
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 156 LFQTITSRKNPHFTW 112
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 6.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -3
Query: 250 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 131
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 166 DGRTLSDYNIQKESTLHLVLRLR 98
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 23.8 bits (49), Expect = 8.3
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 13/113 (11%)
Frame = -3
Query: 304 KTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFA------GKQLE-------D 164
K TGKT + + + ++ K+KIQ +P + L + GK +
Sbjct: 89 KNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTG 148
Query: 163 GRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHP 5
G TL D I+ T+H+V+ G ++ + + +A C + + L P
Sbjct: 149 GTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSP 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,657,213
Number of Sequences: 5004
Number of extensions: 33596
Number of successful extensions: 116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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