Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c16
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    28   1.4  
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    27   3.3  
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    27   3.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.8  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
 Frame = +3

Query: 474 EDPTRSLNVRQMIYMLACDAIQY---NKKVQ 557
           EDPT ++ +++MI +++ DAI Y   N KV+
Sbjct: 553 EDPTANVLLKEMIALISSDAINYPFGNSKVK 583


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 447 PEIPTSYLLEDPTRSLNVR--QMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQ 602
           PEI    L ++     N     + Y+ + +     KKV+K PR   Y++KK+ Q
Sbjct: 57  PEIAERELTQEDIEFFNENPSSLKYLSSINPEDLGKKVEKGPRPDIYDLKKSQQ 110


>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = -1

Query: 455 NFWKMSYIKVKQE*SSTQTQEIKNTPRKAKLRQDVKVLKQKLKSREIVIVNIKSILDLLK 276
           + W M Y+   +    T+    +N  R+++L+ +++  +++LK     + N K I  + K
Sbjct: 211 DIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNVENAKMIEGIRK 270

Query: 275 KNGD 264
           K  +
Sbjct: 271 KRSE 274


>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 463  DVGISGKCPI*RSNKNNQVLKRKK*KIPREKQNY 362
            D GI+ +C I   N  N+++K +  +I  +K+ +
Sbjct: 1022 DAGIASRCEICEINDKNEIVKTRSQRIHSKKKAF 1055


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 413 SSTQTQEIKNTPRKAKLRQDVKVLKQKLKS 324
           +++Q  E  NTP KAK++ + KV + K KS
Sbjct: 458 ANSQATENNNTPSKAKVKAESKV-RSKAKS 486


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 411 KYSNARNKKYPEKSKITTRC*GIETKT*KSRNSDCKYKVD 292
           K+ + R K +  K KITT+C G  TK   SR+ + K  V+
Sbjct: 100 KHYDYRLKSHRIKDKITTKCKG-TTKYFNSRHFEIKNAVE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,336
Number of Sequences: 5004
Number of extensions: 47993
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)