Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c16
(683 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC060840-1|AAH60840.1| 298|Homo sapiens N-ethylmaleimide-sensit... 32 1.7
BC047426-1|AAH47426.1| 204|Homo sapiens NAPB protein protein. 32 1.7
AL096677-4|CAI20156.1| 298|Homo sapiens N-ethylmaleimide-sensit... 32 1.7
AK096494-1|BAC04804.1| 276|Homo sapiens protein ( Homo sapiens ... 32 1.7
D44466-1|BAA07918.1| 953|Homo sapiens proteasome subunit p112 p... 31 3.8
BC114434-1|AAI14435.1| 953|Homo sapiens proteasome 26S non-ATPa... 31 3.8
BC112344-1|AAI12345.1| 953|Homo sapiens proteasome (prosome, ma... 31 3.8
BC094720-1|AAH94720.1| 953|Homo sapiens proteasome (prosome, ma... 31 3.8
BC073833-1|AAH73833.1| 865|Homo sapiens PSMD1 protein protein. 31 3.8
BC064398-1|AAH64398.1| 814|Homo sapiens PSMD1 protein protein. 31 3.8
BC047897-1|AAH47897.1| 844|Homo sapiens PSMD1 protein protein. 31 3.8
BC039845-1|AAH39845.1| 825|Homo sapiens Similar to proteasome (... 31 3.8
BC032445-1|AAH32445.1| 824|Homo sapiens PSMD1 protein protein. 31 3.8
BC020223-1|AAH20223.1| 856|Homo sapiens Unknown (protein for IM... 31 3.8
BC014013-1|AAH14013.1| 848|Homo sapiens PSMD1 protein protein. 31 3.8
BC001053-1|AAH01053.1| 869|Homo sapiens PSMD1 protein protein. 31 3.8
AF019083-1|AAC52017.1| 403|Homo sapiens phosphatase and tensin ... 31 3.8
AC009407-1|AAX93127.1| 953|Homo sapiens unknown protein. 31 3.8
>BC060840-1|AAH60840.1| 298|Homo sapiens N-ethylmaleimide-sensitive
factor attachment protein, beta protein.
Length = 298
Score = 32.3 bits (70), Expect = 1.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 IGHFPEIPTSYLLEDPTRSLNVRQM-IYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 611
I H+ + Y E+ S N + + A QY K ++ + G+ M L YS
Sbjct: 142 IAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYS 201
Query: 612 FHDWFFKFSI*H 647
D+FFK ++ H
Sbjct: 202 AKDYFFKAALCH 213
>BC047426-1|AAH47426.1| 204|Homo sapiens NAPB protein protein.
Length = 204
Score = 32.3 bits (70), Expect = 1.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 IGHFPEIPTSYLLEDPTRSLNVRQM-IYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 611
I H+ + Y E+ S N + + A QY K ++ + G+ M L YS
Sbjct: 48 IAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYS 107
Query: 612 FHDWFFKFSI*H 647
D+FFK ++ H
Sbjct: 108 AKDYFFKAALCH 119
>AL096677-4|CAI20156.1| 298|Homo sapiens N-ethylmaleimide-sensitive
factor attachment protein, beta protein.
Length = 298
Score = 32.3 bits (70), Expect = 1.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 IGHFPEIPTSYLLEDPTRSLNVRQM-IYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 611
I H+ + Y E+ S N + + A QY K ++ + G+ M L YS
Sbjct: 142 IAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYS 201
Query: 612 FHDWFFKFSI*H 647
D+FFK ++ H
Sbjct: 202 AKDYFFKAALCH 213
>AK096494-1|BAC04804.1| 276|Homo sapiens protein ( Homo sapiens
cDNA FLJ39175 fis, clone OCBBF2003593, highly similar to
BETA-SOLUBLE NSF ATTACHMENT PROTEIN. ).
Length = 276
Score = 32.3 bits (70), Expect = 1.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 IGHFPEIPTSYLLEDPTRSLNVRQM-IYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 611
I H+ + Y E+ S N + + A QY K ++ + G+ M L YS
Sbjct: 142 IAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYS 201
Query: 612 FHDWFFKFSI*H 647
D+FFK ++ H
Sbjct: 202 AKDYFFKAALCH 213
>D44466-1|BAA07918.1| 953|Homo sapiens proteasome subunit p112
protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC114434-1|AAI14435.1| 953|Homo sapiens proteasome 26S non-ATPase
subunit 1 protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC112344-1|AAI12345.1| 953|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 1 protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC094720-1|AAH94720.1| 953|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 1 protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC073833-1|AAH73833.1| 865|Homo sapiens PSMD1 protein protein.
Length = 865
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC064398-1|AAH64398.1| 814|Homo sapiens PSMD1 protein protein.
Length = 814
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC047897-1|AAH47897.1| 844|Homo sapiens PSMD1 protein protein.
Length = 844
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC039845-1|AAH39845.1| 825|Homo sapiens Similar to proteasome
(prosome, macropain) 26S subunit, non-ATPase, 1 protein.
Length = 825
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC032445-1|AAH32445.1| 824|Homo sapiens PSMD1 protein protein.
Length = 824
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC020223-1|AAH20223.1| 856|Homo sapiens Unknown (protein for
IMAGE:5087823) protein.
Length = 856
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC014013-1|AAH14013.1| 848|Homo sapiens PSMD1 protein protein.
Length = 848
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>BC001053-1|AAH01053.1| 869|Homo sapiens PSMD1 protein protein.
Length = 869
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
>AF019083-1|AAC52017.1| 403|Homo sapiens phosphatase and tensin
homolog 2 protein.
Length = 403
Score = 31.1 bits (67), Expect = 3.8
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = -2
Query: 493 SERVGSSSKYDVGISGKCPI*RSNKNNQVLKRKK*KIPREKQNYDKMLRY*NKNLKV 323
SE+V + S D I C I R++ + + L K +K N DK RY + N+KV
Sbjct: 287 SEKVENGSLCDQEIDSICSIERADNDKEYLVLTLTKNDLDKANKDKANRYFSPNVKV 343
>AC009407-1|AAX93127.1| 953|Homo sapiens unknown protein.
Length = 953
Score = 31.1 bits (67), Expect = 3.8
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Frame = -3
Query: 471 VNMTLEFLENVLYKGQTRIIKYSNARNKKYPE--KSKITTRC*GIETKT*KSRNSDCKYK 298
VN E++E ++ K K N PE K I R GI K + D KYK
Sbjct: 90 VNDNSEYVETIIAKCIDHYTKQC-VENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYK 148
Query: 297 VDFRFIKEKWRFLIELKFKLRNFNDTHGPLRY*LK*IMYFVEKKEF 160
E R + K L + ND G L Y LK M ++ K+F
Sbjct: 149 QAIGIALETRRLDVFEKTILES-NDVPGMLAYSLKLCMSLMQNKQF 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,970,399
Number of Sequences: 237096
Number of extensions: 1325461
Number of successful extensions: 2328
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2328
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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