Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c16
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical ...    29   4.1  
AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z81536-8|CAB04369.2|  352|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    28   7.1  

>Z68301-6|CAA92621.1|  170|Caenorhabditis elegans Hypothetical
           protein W01B6.8 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 303 IYNHY-FATFKFLFQYLNILS*FCFSRGIFYFLRLST*LFLF 425
           ++N++ F+ F F+ QY NI S  C S+ +  + ++S  LFLF
Sbjct: 1   MFNNFPFSKFPFISQYFNITSEGCSSKIMCLYSQISIILFLF 42


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 398 QEIKNTPRKAKLRQDVKVLKQKLKSREIVIVNIKSILDLLKKN 270
           +EIKNT + A + + VK+L+ KLKS   ++   K +   + K+
Sbjct: 526 KEIKNTDKIASILRSVKILR-KLKSDRKLVEKFKEVSSAVSKS 567


>Z73102-13|CAA97405.1|  836|Caenorhabditis elegans Hypothetical
           protein B0035.12 protein.
          Length = 836

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 365 LRQDVKVLKQKLKSREIVIVNIKSILDLLKKNGDF 261
           L ++++ +KQK+      +V    +L LL+KNGDF
Sbjct: 18  LDEEIQKIKQKMIDDSQSVVLANQLLILLRKNGDF 52


>AF016681-3|AAB66173.1|  159|Caenorhabditis elegans Hypothetical
           protein F22E5.9 protein.
          Length = 159

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
 Frame = -1

Query: 449 WKMSYIKVKQE*SSTQTQE-----IKNTPRKAKLRQDVKVLKQKLKSREIVIVNIKSILD 285
           WK  Y  +K    +  + E     +KN   K +   D  V K+KL +        KS+ D
Sbjct: 7   WKKCYDSIKTVAKTVPSAEDSMKGVKNAASKMRAGVDEIVEKRKLYAESETAKLKKSLKD 66

Query: 284 LLKKNGDF*L-N*NLNCE 234
           L K+N D  + N NL+ E
Sbjct: 67  LSKENSDLKMQNLNLSAE 84


>AL110484-6|CAE46683.1| 1345|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6b protein.
          Length = 1345

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 434  IKVKQE*SSTQTQEIKNTPRKAKLRQDVKVLKQK 333
            I  K E +  + QEI+ +P+K++ RQ+++ + QK
Sbjct: 954  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 987


>AL110484-5|CAB60334.3| 1343|Caenorhabditis elegans Hypothetical
            protein Y38E10A.6a protein.
          Length = 1343

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 434  IKVKQE*SSTQTQEIKNTPRKAKLRQDVKVLKQK 333
            I  K E +  + QEI+ +P+K++ RQ+++ + QK
Sbjct: 952  IPKKSEKAPEKPQEIEKSPKKSEKRQEIQEIPQK 985


>Z81536-8|CAB04369.2|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.11 protein.
          Length = 352

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 632 FEKPIVKTIILQCLFHIIRAITWYFLNFFIVLNSVARKHVYHL 504
           FE P+   +I+    HI+R +TW+FL  F VLN  A    +H+
Sbjct: 194 FEFPV---LIMSTDEHILRWLTWFFLPLF-VLNGGANA-TFHI 231


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 447 PEIPTSYLLEDPTRSLNVRQMIYMLACDAIQYNKKVQKIPRDGSYNMKKTLQNYS 611
           PE+  SY  +    S+N  Q  Y  + + I Y  + Q +  + SY  ++ L+N S
Sbjct: 297 PEMQKSYNNDYRQSSINSHQDKYENSSNGINYTDRNQDVYNNKSYGQQEWLKNTS 351


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 638 TKFEKPIVKTIILQCLFHIIRAITWYFLNFF 546
           TK +  ++    L C FH   ++ + ++NFF
Sbjct: 252 TKMQATVLLQAFLFCFFHATSSVVYVYMNFF 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,763
Number of Sequences: 27780
Number of extensions: 255184
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)