Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c13
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    31   0.18 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   3.8  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    26   5.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   5.0  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   6.6  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.8  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -3

Query: 325 GDLKFLITENGISTGPGLDDRMRVEYYRDHLKELLLAIHEDGVNVVGFTAWTLMDNFEWN 146
           GD+    TE G+   P   +  +++Y   H+KE    +     N+ GF   + ++ F   
Sbjct: 251 GDINNNDTELGLIENPMNLETPKIDYATPHIKESNTPLFTYNFNISGFDGDSCIEKFTPL 310

Query: 145 DGLGSK 128
           D LG K
Sbjct: 311 DALGIK 316


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 186 DSQRGP*WTTSSGTMVSDPNSDYTK*TSPLRSARGR 79
           D Q  P  + +S +  +D   D TK  SP+ S RGR
Sbjct: 180 DGQSDPESSNASDSDFADSPDDLTKVRSPIPSRRGR 215


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
 Frame = -3

Query: 358 RPQIMWLKEKYGDLKFLITENGISTGPGLDDRMRVEYYRDHLKELLLA-IHEDGVNV--- 191
           R ++ WL EK  +  F +T           D +  ++ + + + L+   I   G++V   
Sbjct: 270 RRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQV 329

Query: 190 ---VGFTAWTLMDNFEWNDGLGSKFGL--YEVNFTSPQRTRTPRASAHYYKSIID 41
              + +      +N+    G   +FG     +NF + +  R  R    YY ++ID
Sbjct: 330 SLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVID 384


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 235 LKELLLAIHEDGVNVVGFTAWTLMDNFE 152
           L E LLA+  D +   GF   TL++ FE
Sbjct: 474 LMEYLLAVANDNLKCAGFMDNTLLNTFE 501


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 497 QTTRVEIHSVVVVCTSNQIYFLFRE 571
           Q   + + +++V CT  Q YFLF +
Sbjct: 302 QAMNIVLAALLVYCTEEQAYFLFSQ 326


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 409 SWVAGYSSWFYVTPEYFRPQIMW 341
           SW A  S W +V P  FR  I+W
Sbjct: 224 SW-APQSDWTFVPPNEFRRFILW 245


>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 214 WLEVTLLNDPYNTRPSFCHPI 276
           W  V  +N  Y TRP +C  +
Sbjct: 25  WSSVATINAMYQTRPLYCESV 45


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 529 YYGMNFYTSRLVRKARPGESIGAWPMN 449
           YYG +FY + +  +    E++  WP N
Sbjct: 38  YYGESFYINIVCSRPIVDENVTTWPEN 64


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 180 VNPTTLTPSSWMARSNSF 233
           +N  T T  +WM RSNSF
Sbjct: 204 INMKTTTIPAWMERSNSF 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,512
Number of Sequences: 5004
Number of extensions: 55141
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)