Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c13
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.6  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            21   9.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 263 SVIQSWSSRNTVFSDQELQVPVFFFQPHNLRSEIFRGYIEPARIAGD 403
           S+ + WS  +T  SD+++ +     + H LR  + R Y   + +  D
Sbjct: 211 SIARCWSLDSTAASDEDISLTTHQQKRHKLR--VTRCYSSDSAVLSD 255


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 516 ISTRVVWCGRRGPANLSEPG 457
           +ST V+ CG    AN+++ G
Sbjct: 442 VSTTVILCGSPPSANIAKEG 461


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 331 KYGDLKFLITENGIST 284
           K G LK+ I++N IST
Sbjct: 439 KNGRLKYQISDNDIST 454


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 160 NFEWNDGLGSKFGL 119
           NF+W DGL   FGL
Sbjct: 232 NFQWKDGL---FGL 242


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 388 SWFYVTPEYFRPQIMWLKE 332
           ++F +   + RP+I WLK+
Sbjct: 41  TFFCMATGFPRPEITWLKD 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,071
Number of Sequences: 438
Number of extensions: 3800
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)