Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c12
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    29   0.48 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    28   1.5  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    27   1.9  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    27   1.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   1.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.9  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   7.9  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 483 NKNRTQMSNPNKKMSKKQFNQNMYLLIHLKQ 575
           N  ++++SN N  + K  F QN Y  +H KQ
Sbjct: 196 NTKKSKISNENDTIFKANFQQNKYESLHAKQ 226


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 552 YLLIHLKQ*FRLLTTIFKSILREYFY 629
           +LLI L+  FR+ T I  S LR +FY
Sbjct: 21  FLLIALESMFRICTVILPSPLRNWFY 46


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 326 RNLRIIVIFLYHISCCYLYTHIKSNQSNYKF*YHHKNCT 442
           R + II+  L+ I CC L+  +KS   N      +  CT
Sbjct: 232 REMMIIIWLLWLIICCILFGCVKSGDLNLNKALIYSTCT 270


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 326 RNLRIIVIFLYHISCCYLYTHIKS 397
           R + II+  L+ I CC L+ +IKS
Sbjct: 161 REMMIIIWILWLIICCILFVYIKS 184


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 326 RNLRIIVIFLYHISCCYLYTHIKSNQSNYKF*YHHKNCT 442
           R + II+  L+ I CC L+  +KS   N      +  CT
Sbjct: 199 REMMIIIWLLWLIICCILFGCVKSGDLNLNKALIYSTCT 237


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 188  LDYLLNVGVSNLDSL*QLVSIITVFNKKG 274
            LDY +NV  SNLDSL ++ ++  +    G
Sbjct: 3863 LDYFINVHNSNLDSLSKISTLFFMVANNG 3891


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 329 NLRIIVIFLYHISCCYLYTHIKS 397
           N R+I +FL++    YL+TH+ S
Sbjct: 207 NDRVINLFLFYEKFSYLFTHLLS 229


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +3

Query: 312 CQLRHEILGSS*FFFITYLVVICTHTSNQINRIINFNIT 428
           C     +LG     F  Y    C HT N ++   N+N +
Sbjct: 402 CNTGFNLLGKMKQSFFEYFQASCRHTLNLLDENANYNFS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,650
Number of Sequences: 5004
Number of extensions: 48167
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)