Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c11
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    29   0.63 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    27   3.3  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   3.3  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   5.8  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   7.7  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 58  NASHTIIQLTGNLLDMYYSIVYIEY-MSNIIINLYMIHYLTTTVVPLYKMHTII 216
           +ASH ++ L+ N +++     YI+Y M   II+L++  Y  +TV P Y +   +
Sbjct: 273 SASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFV--YSGSTVSPKYTIQQYV 324


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 106 YYSIVYIEYMSNIIINLYMIHYLTTTVVPLYKMHTI 213
           Y   ++    S++  NLYM+  L T ++P  + H +
Sbjct: 500 YVQCLFENITSSLNENLYMVDMLKTLIIPAVRSHDL 535


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 634 WKEGHSRSCSCWC-DQITTLTGLP 566
           +K G S SC CW  D ++ +TG P
Sbjct: 293 YKHGFSVSCCCWLPDGLSFITGSP 316


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 184 VVPLYKMHTIIYHGS 228
           V+PL +MH I++HG+
Sbjct: 604 VIPLIEMHDILFHGN 618


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   KKNNTVKEYFTCNFYHRS*TLV 67
           KK + +KE+ +C F  RS TL+
Sbjct: 240 KKTDNIKEFTSCEFNDRSRTLL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,030
Number of Sequences: 5004
Number of extensions: 49947
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)