Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c11
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583...    29   3.4  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    28   7.9  

>12_01_0684 +
           5828947-5829012,5831123-5832103,5832200-5832326,
           5832623-5832705,5832752-5832917,5833337-5833399,
           5833624-5833733,5834227-5834276,5834528-5834664,
           5835180-5835281,5835871-5835988,5836575-5836627,
           5836710-5836813,5836910-5836972,5837375-5837503,
           5837508-5837605,5838446-5838500,5839260-5839311,
           5839996-5840113,5841906-5842035,5842156-5842437
          Length = 1028

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +1

Query: 55  LNASH--TIIQLTGNLLDMYYSIVYIEYMSNIIINLYMIHYLTTTVVPLYKMHTIIYHGS 228
           LN SH  TI QLTG L      + Y+E  S +    +++  L  T +  ++M   +  G+
Sbjct: 690 LNCSHLETINQLTGALPTSLGDLPYLEGWSVLGPYWFLLLTLDITFLRAHQMVVPVGDGN 749

Query: 229 *VKIISTLRI 258
            V++IS L +
Sbjct: 750 IVQVISRLHV 759


>12_02_0858 + 23740589-23743233,23743362-23743503,23744778-23744990,
            23745083-23745190,23745378-23745587,23745881-23746055,
            23746197-23746264
          Length = 1186

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 373  ARYITNNFFKCEHDPTQDSTTMLQTKHLLRRFLHY 477
            A+ + +N  KC HDP  +       +H+  RF+ +
Sbjct: 943  AKELNSNIMKCIHDPNANHVVQKCIEHVPPRFIQF 977


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,905
Number of Sequences: 37544
Number of extensions: 304842
Number of successful extensions: 700
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)