Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c11
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X64643-1|CAA45917.1|  291|Homo sapiens C6.1A protein.                  35   0.23 
S72931-1|AAB30469.2|  363|Homo sapiens T-cell receptor alpha cha...    35   0.23 
S68015-1|AAB29005.2|  321|Homo sapiens c6.1A protein.                  35   0.23 
BX470111-6|CAO03576.1|  247|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX470111-5|CAI41654.1|  291|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX470111-4|CAO03575.1|  292|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX470111-3|CAI41655.1|  316|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX470111-2|CAO03574.1|  226|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX470111-1|CAO03573.1|   90|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX293995-4|CAO03602.1|  247|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX293995-3|CAH70538.1|  291|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX293995-2|CAO03601.1|  292|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BX293995-1|CAH70537.1|  316|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BC006540-1|AAH06540.1|  316|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
BC002999-1|AAH02999.1|  316|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
AY438030-1|AAR30498.1|  316|Homo sapiens BRCA1/BRCA2-containing ...    35   0.23 
U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate rece...    31   5.0  
L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.          31   5.0  
BC041128-1|AAH41128.1|  907|Homo sapiens Similar to glutamate re...    31   5.0  
BC035556-1|AAH35556.1|  538|Homo sapiens dolichol kinase protein.      30   8.8  
AY358759-1|AAQ89119.1|  538|Homo sapiens TREC2422 protein.             30   8.8  
AL672142-9|CAI10844.1|  538|Homo sapiens dolichol kinase protein.      30   8.8  
AB029017-1|BAA83046.2|  544|Homo sapiens KIAA1094 protein protein.     30   8.8  

>X64643-1|CAA45917.1|  291|Homo sapiens C6.1A protein.
          Length = 291

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>S72931-1|AAB30469.2|  363|Homo sapiens T-cell receptor alpha
           chain-c6.1A fusion protein protein.
          Length = 363

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 58  TEAERLAELTGRPMRVVGWYHSHPHITVWPS 88


>S68015-1|AAB29005.2|  321|Homo sapiens c6.1A protein.
          Length = 321

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 107 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 137


>BX470111-6|CAO03576.1|  247|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 247

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BX470111-5|CAI41654.1|  291|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 291

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BX470111-4|CAO03575.1|  292|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 292

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 103 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 133


>BX470111-3|CAI41655.1|  316|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BX470111-2|CAO03574.1|  226|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 226

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 78  TEAERLAELTGRPMRVVGWYHSHPHITVWPS 108


>BX470111-1|CAO03573.1|   90|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 90

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 44  TEAERLAELTGRPMRVVGWYHSHPHITVWPS 74


>BX293995-4|CAO03602.1|  247|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 247

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BX293995-3|CAH70538.1|  291|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 291

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BX293995-2|CAO03601.1|  292|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 292

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 103 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 133


>BX293995-1|CAH70537.1|  316|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BC006540-1|AAH06540.1|  316|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>BC002999-1|AAH02999.1|  316|Homo sapiens BRCA1/BRCA2-containing
           complex, subunit 3 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>AY438030-1|AAR30498.1|  316|Homo sapiens BRCA1/BRCA2-containing
           complex subunit 36 protein.
          Length = 316

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 537 SSTSRGAVATGRPVRVVIWSHQQLHDRLWPS 629
           +   R A  TGRP+RVV W H   H  +WPS
Sbjct: 102 TEAERLAELTGRPMRVVGWYHSHPHITVWPS 132


>U77782-1|AAB71624.1| 1236|Homo sapiens N-methyl-D-aspartate
           receptor 2C subunit precursor protein.
          Length = 1236

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 509 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 601
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356


>L76224-1|AAA88096.1| 1233|Homo sapiens NMDA receptor protein.
          Length = 1233

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 509 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 601
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 327 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 356


>BC041128-1|AAH41128.1|  907|Homo sapiens Similar to glutamate
           receptor, ionotropic, N-methyl D-aspartate 2C protein.
          Length = 907

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = +2

Query: 509 SRELFPPRPVLNFTWGGCDW*TS*GGYLVTP 601
           +RE F  R +LN TW G D+  S GGYLV P
Sbjct: 361 AREAFY-RHLLNVTWEGRDFSFSPGGYLVQP 390


>BC035556-1|AAH35556.1|  538|Homo sapiens dolichol kinase protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +2

Query: 383 LLIIFLNVNMILLRIVPQCF 442
           +L+IF+ +NMILL ++P+CF
Sbjct: 170 VLLIFVYLNMILLYLLPRCF 189


>AY358759-1|AAQ89119.1|  538|Homo sapiens TREC2422 protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +2

Query: 383 LLIIFLNVNMILLRIVPQCF 442
           +L+IF+ +NMILL ++P+CF
Sbjct: 170 VLLIFVYLNMILLYLLPRCF 189


>AL672142-9|CAI10844.1|  538|Homo sapiens dolichol kinase protein.
          Length = 538

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +2

Query: 383 LLIIFLNVNMILLRIVPQCF 442
           +L+IF+ +NMILL ++P+CF
Sbjct: 170 VLLIFVYLNMILLYLLPRCF 189


>AB029017-1|BAA83046.2|  544|Homo sapiens KIAA1094 protein protein.
          Length = 544

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +2

Query: 383 LLIIFLNVNMILLRIVPQCF 442
           +L+IF+ +NMILL ++P+CF
Sbjct: 176 VLLIFVYLNMILLYLLPRCF 195


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,118,520
Number of Sequences: 237096
Number of extensions: 1808454
Number of successful extensions: 3130
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3130
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)