Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c10
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         26   4.4  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   7.8  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 522 LFSFKRCIQTINNHLVHCVDLKLKQNKYL*NDRNQML 632
           +F  +  IQ   NH V   D+K K+NK + N  N  L
Sbjct: 23  IFQDEPMIQKFENHYVFKKDMKSKRNKEVKNQMNDWL 59


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +1

Query: 22  NVVSKAIFFLKLWFCSLLLFFNI*MFHSQHRTYFFC 129
           N  S   FF   W  + +LFF I ++    R    C
Sbjct: 70  NSFSNLHFFFLFWLLNFILFFRIHLYSCNFRMSIIC 105


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 380 RAYKSSTRFCRILV*KSSCCVRYPAVKRIIFISCLFEGIVKFCRVVLS 523
           ++Y +S  +C+  +  S+    Y  +  IIF SC+F  + +F R  ++
Sbjct: 48  KSYSASIDYCQRFLFSSNLKHNYVNLN-IIFTSCIFRSLREFLRFYIA 94


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 326 VNKNKIRQINVVVQRHSVRAYKSSTRFC 409
           V   K+ +I+ V+++  +   K STRFC
Sbjct: 86  VKATKLMKIDEVLEKAKIAKAKGSTRFC 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,449
Number of Sequences: 5004
Number of extensions: 51869
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)