Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c10
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   8.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 170 NYLGRIRPNLNLNSSNYTRNNLF 238
           NY+  +RPN   +  N TR +++
Sbjct: 627 NYINLVRPNTFTDKVNLTRVDMY 649


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 513 WFYLFSFKRCIQTI 554
           WF L SF  CI T+
Sbjct: 309 WFLLMSFGYCIATL 322


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 200 NLNSSNYTRNNLFHDFN 250
           N N++NY  NN  +++N
Sbjct: 332 NYNNNNYNNNNYNNNYN 348


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 358 NIYLPDFIFVHHSLCYSRIVIPS 290
           NI++PD  FV+    Y  I   S
Sbjct: 92  NIWVPDTFFVNEKQSYFHIATTS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 358 NIYLPDFIFVHHSLCYSRIVIPS 290
           NI++PD  FV+    Y  I   S
Sbjct: 92  NIWVPDTFFVNEKQSYFHIATTS 114


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 258 KFIVVFPRILALGITIR 308
           KF+V+F  IL++ + IR
Sbjct: 3   KFLVIFVYILSVAVIIR 19


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 358 NIYLPDFIFVHHSLCYSRIVIPS 290
           NI++PD  FV+    Y  I   S
Sbjct: 31  NIWVPDTFFVNEKQSYFHIATTS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,330
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)