Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c08
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos...    76   2e-15
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    29   0.36 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   0.84 
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    26   2.6  
SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit Mrp...    25   3.4  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   3.4  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   3.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   3.4  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    25   3.4  
SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.5  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.9  

>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 75.8 bits (178), Expect = 2e-15
 Identities = 44/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
 Frame = -3

Query: 349 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 170
           S L   +  +   Y   T   LK IDA+L ++ +   +QFGY  LVGT+PFNSFLSGFIS
Sbjct: 5   SGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVVGGLQFGYALLVGTYPFNSFLSGFIS 64

Query: 169 TVSCFVLGVCLRLQVNPE------NKNEFQGLSA-ERGFADFIFAHLVLH 41
            V  FV+ V  R+ +  +      +K +   +S  +R F +F F+ LVLH
Sbjct: 65  CVGQFVITVGFRMALTQQELQSSSSKKKSPVVSPYKRAFLEFCFSSLVLH 114


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = +3

Query: 114 FSGLTCSRRHTPRTKQLTVDIKP-------LKKELNGKVPTRQ---Q*PNCMTAVRKI*K 263
           F G+T  RRH    K    DI P       L KE+N      Q   + P+   ++R   +
Sbjct: 36  FEGVTLQRRHVKGMKSYGSDITPRRPKQLGLPKEVNTSECIDQGSWRKPSAFESLRSYSR 95

Query: 264 RYASIILSFLGV 299
           +++  I SF+GV
Sbjct: 96  KFSKRIFSFIGV 107


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -3

Query: 379 YYCKINKITMSSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVG 209
           Y C+ + I  + L    PK+       T   L  +D YL+YI ++ +    Y   +G
Sbjct: 541 YDCR-DYILGAGLCKAQPKILLSLLYLTDLSLFFLDTYLWYILISTIYSLAYAFCLG 596


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 346 SLTAVIPK--LYQEYTTKTPKKLKIID 272
           +LT   PK  LY  Y++++PK  KI+D
Sbjct: 145 NLTVASPKSNLYYRYSSESPKYAKILD 171


>SPAC24C9.13c |mrp10||mitochondrial ribosomal protein subunit
           Mrp10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 88

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 357 SQCLHLLL*FQNCIKNTQRK 298
           +QC +L+   +NC+K T RK
Sbjct: 51  AQCANLVAALENCMKTTHRK 70


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 206 FPI*FFLKWFYIYSKLL 156
           FP  FFL WFY++  +L
Sbjct: 293 FPFLFFLFWFYMHFNIL 309


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 142 CLRLQVNPENKNEFQGLSAERGFADF 65
           C++ QV+P+  NEF   +A++    F
Sbjct: 356 CVKFQVDPDKPNEFLAGTADKRILQF 381


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 367 INKITMSSLTAVIPKLYQE 311
           INK+  S++  +IP+L+QE
Sbjct: 131 INKVNKSNIRDIIPELFQE 149


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -3

Query: 265 LFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSC----FVLGVCL 137
           L  +F+  ++ +G C +  T PF      F  T S     F+LG C+
Sbjct: 448 LLAVFVLFMLFWGTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCI 494


>SPBC16E9.14c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 331 IPKLYQEYTTKT-PKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVS 161
           IP   + +   T P+KLK+  + LF++    V+  G   ++ T   +  + G +  ++
Sbjct: 80  IPTFKETFAILTFPQKLKLTSSILFFLVAVGVLLSGDATILLTLSCSLIVEGVLIIIN 137


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -3

Query: 349 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGT 206
           +SL +  PK        T   L  +D YL+Y+ ++ +    Y   +G+
Sbjct: 641 ASLCSHQPKFLLSLVYLTDLVLFFLDTYLWYMLISTMFSIAYSFYMGS 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,095
Number of Sequences: 5004
Number of extensions: 33464
Number of successful extensions: 109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)