Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c07
(553 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.11
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 31 0.15
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.8
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 26 4.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.6
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.4
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 25 7.4
SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24 famil... 25 9.8
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 25 9.8
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 25 9.8
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 191 SCLELLCCVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHG 48
+CL L + + KY+ F +D R + V R+SG +L L HG
Sbjct: 2514 NCLASLDLLHIFIKYTTSSFFLTDDFVRFIRVCFHSRISGNLLTLLHG 2561
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = -2
Query: 474 GNAIRENAETSNVKDKNTTANDLDKPVDYENK--EECFQIGHSCTNHKDCCTNA 319
GN EN + + D N L KP +EN + F +G + HK C++A
Sbjct: 172 GNTSMENLADTIMTDLNNIWASLSKPEGFENSVINDFFDVGFTGLPHKILCSDA 225
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 282 RTLKRISSHNPDTHSCNSPYGWYRNVQSENIL 377
R+ + S PDT SC SP+G R + NIL
Sbjct: 150 RSFRIEESVQPDTMSCLSPWGTERLTATINIL 181
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 4.2
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Frame = -3
Query: 407 WTNPWIMKIKKNVFRL---DIPVPTI---RTVARMRVWVMRRNAFQGPGKSG*KTCRLFY 246
WT M +KK+ FRL D+P+ + VA R +VM R G KT LFY
Sbjct: 511 WTGKIPMFVKKSTFRLAPPDVPIIMVGPGTGVAPFRGFVMERANLASKGVKVAKTL-LFY 569
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +3
Query: 30 WKISESAMKEIQHFAANPPDLTHLNHP 110
+ I S K++ HF + P TH HP
Sbjct: 879 YTIGTSNAKDVSHFVFSCPYYTHFCHP 905
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 318 THSCNSPYGWYRNVQSENILLY 383
T SCN+ +YRN Q +++ Y
Sbjct: 939 TQSCNTLSNFYRNAQEKSLHAY 960
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 65 TFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAPNK 190
TFCR LD P P+ P N +L + S+ + PNK
Sbjct: 218 TFCR---MLDEPLPANNPVQSNSRLVPLMKDFSNDIKHTPNK 256
>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 330 NSPYGWYRNVQSENILLYFHN 392
+SP WY VQS + LY HN
Sbjct: 209 SSPREWYTFVQSISKHLYIHN 229
>SPAC3H1.14 ||SPAC9G1.01|cytoplasmic vesicle protein, Vid24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 195
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 408 LDKPVDYENKEECFQIGHS 352
LDK VDY+N + F G S
Sbjct: 129 LDKTVDYQNHNQSFPFGIS 147
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 YPKNQKLNWNIFHISSRNRGAPN 187
YP N+ +N+N FH SS A N
Sbjct: 39 YPLNKIVNYNHFHSSSCQSEAKN 61
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 450 ETSNVKDKNTTANDLDKPVDYENKEE 373
ETS KD++ TA L +D++ +EE
Sbjct: 455 ETSFEKDEDLTAKHLSHILDFKEQEE 480
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,277
Number of Sequences: 5004
Number of extensions: 56019
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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