Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c07
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553     29   1.9  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     29   2.5  
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    29   2.5  
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59...    28   4.3  
03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835     28   4.3  
01_06_1831 + 40198371-40198625,40199614-40200141                       28   5.7  
04_01_0630 - 8354628-8355803,8355837-8355926                           27   10.0 
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    27   10.0 

>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
          Length = 362

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 122 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 36
           DR   +  V++ W   G +LDL+  +F+N
Sbjct: 87  DRTVIITSVNEAWAAPGSLLDLYRDSFKN 115


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 170 CVRKYEKYSNLIFDFSDRVYRMVEVSQVWRVSGKMLDLFHGAFRNF 33
           C+ + + YSN     S++ + +V V  +W +  K  ++FHG   +F
Sbjct: 259 CIAEPDDYSN---SDSNKEWPLVTVKTIWEMREKHKNIFHGKIGDF 301


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = +1

Query: 316 TRIRATVLMVGTGMSNLKTFFFIFIIHGFVQIICSSIFILYV*SFCIFPYCISSHVSDDK 495
           TR R    M+   +    TFF  +++      +CS I  +Y   +  F  CI  +  D +
Sbjct: 455 TRPRDMPSMLAELVPKQATFFITYVLTSGWASLCSEILQVYNLVYNFFRKCIFCYRDDPE 514

Query: 496 NNAKYKYYTRHYDQVLF 546
               + Y+T     +LF
Sbjct: 515 YGYSFPYHTEVPKVLLF 531


>04_01_0058 +
           592846-593185,594641-595182,596298-596987,597078-597233,
           597277-597856,598601-598764,598907-599100,599702-599750,
           599777-599806
          Length = 914

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 471 NAIRENAETSNVKDKNTTANDLDKPVDYENKEECFQI-GHSCT 346
           NA     E+  V+ K ++AND D P+    K     I GHS T
Sbjct: 646 NAKESKDESPQVEPKPSSANDCDNPISQVAKRASDNIRGHSST 688


>03_06_0685 + 35539908-35540180,35542350-35542730,35543350-35543835
          Length = 379

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 122 DRVYRMVEVSQVWRVSGKMLDLFHGAFR 39
           DR   M +++  W   G +LDLF  +FR
Sbjct: 113 DRTVIMTQINLAWTKPGSLLDLFFESFR 140


>01_06_1831 + 40198371-40198625,40199614-40200141
          Length = 260

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 122 DRVYRMVEVSQVWRVSGKMLDLFHGAFRN 36
           D+   +  V+  W   G +LDLF  +F N
Sbjct: 102 DKTVIITSVNDAWAAPGSLLDLFRDSFHN 130


>04_01_0630 - 8354628-8355803,8355837-8355926
          Length = 421

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 354 SCTNHKDCCTNACLGYAK--KCVSGSG*KRIKNL 259
           SC N  D  T + L Y+   KCV G G +R+KNL
Sbjct: 378 SCDNLSDLFTKS-LPYSTFFKCVEGIGMRRLKNL 410


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 83  SRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAP 184
           +R + PQ  Y P P+   LN   F  S+R+   P
Sbjct: 221 ARDEQPQIQYVPLPEPMPLNKESFRPSNRSESCP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,102,537
Number of Sequences: 37544
Number of extensions: 321270
Number of successful extensions: 880
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)