Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c07
(553 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical... 31 0.55
Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 28 5.1
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 28 5.1
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 28 5.1
Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z69902-2|CAA93764.1| 326|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.8
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 6.8
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.8
Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical pr... 27 6.8
X53245-1|CAA37335.1| 63|Caenorhabditis elegans metallothionein... 27 6.8
M92910-1|AAA28111.1| 63|Caenorhabditis elegans metallothionein... 27 6.8
M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein ( C.ele... 27 6.8
M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein ( C.ele... 27 6.8
D17365-1|BAA04181.1| 63|Caenorhabditis elegans metallothionein... 27 6.8
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.8
AF022978-7|AAG24177.2| 403|Caenorhabditis elegans Nuclear hormo... 27 6.8
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical pr... 27 9.0
>AF125955-11|AAK71367.1| 178|Caenorhabditis elegans Hypothetical
protein F46E10.11 protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.55
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 529 NVSCSTCTLHCFCRRIR-DWKCNKGKCR 449
N + +TC+ +C++IR +W+C G CR
Sbjct: 64 NCNTATCSTSSYCQQIRSNWRCINGCCR 91
>Z81534-5|CAB04348.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 221 FCNRYMMSNKINDKFFIRFYPDPETHFFA*PRHAFVQQSLWLVQ 352
FC ++S+ ++FFI F P F+ H F Q + L+Q
Sbjct: 127 FCQELLVSSPFFERFFIFFIPRVSGMLFSTIFHTFCSQLMELLQ 170
>Z47074-2|CAA87377.2| 694|Caenorhabditis elegans Hypothetical
protein F37H8.2 protein.
Length = 694
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 221 FCNRYMMSNKINDKFFIRFYPDPETHFFA*PRHAFVQQSLWLVQ 352
FC ++S+ ++FFI F P F+ H F Q + L+Q
Sbjct: 127 FCQELLVSSPFFERFFIFFIPRVSGMLFSTIFHTFCSQLMELLQ 170
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 30 WKISESAMKEIQHF-AANPPDLTHL 101
W+ E +EIQHF A+PP LT L
Sbjct: 82 WEDQEKLRQEIQHFKTASPPTLTPL 106
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans
Poly(adp-ribose) metabolism enzymeprotein 1 protein.
Length = 945
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 30 WKISESAMKEIQHF-AANPPDLTHL 101
W+ E +EIQHF A+PP LT L
Sbjct: 82 WEDQEKLRQEIQHFKTASPPTLTPL 106
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = -2
Query: 408 LDKPVDYENKEECFQ----IGHSCTNHKDCCTN 322
L+ +Y ECF I CT+ +DCC N
Sbjct: 688 LNTSFEYSKSRECFHDANLIQEKCTHLRDCCPN 720
>Z81589-7|CAB61028.1| 63|Caenorhabditis elegans Hypothetical
protein T08G5.10 protein.
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>Z69902-2|CAA93764.1| 326|Caenorhabditis elegans Hypothetical
protein C47D12.3 protein.
Length = 326
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 209 YVFK*KSCLELLCCVRKYEKYSNLIFDFSDRVY-RMVEVSQVWRVSGKMLDLFH 51
Y F +CL L K EK N++ ++ Y + V ++W+ FH
Sbjct: 30 YFFSTANCLNLFVSNAKLEKARNIVLEYKQGKYDPNMTVDELWKAKTLYDSAFH 83
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 378 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 286
+EC H+C H D C + GY KC SG
Sbjct: 83 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 112
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 378 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 286
+EC H+C H D C + GY KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 378 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 286
+EC H+C H D C + GY KC SG
Sbjct: 83 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 112
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 378 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 286
+EC H+C H D C + GY KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696
>Z22180-5|CAA80174.2| 717|Caenorhabditis elegans Hypothetical
protein K11H3.4 protein.
Length = 717
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 450 ETSNVKDKNTTANDLDKPVDYENKEE 373
+TS D+NT+A + D+P D +N E
Sbjct: 18 DTSQELDENTSAKETDQPKDAQNDPE 43
>X53245-1|CAA37335.1| 63|Caenorhabditis elegans metallothionein-II
protein.
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>M92910-1|AAA28111.1| 63|Caenorhabditis elegans metallothionein-2
protein.
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>M32387-1|AAA28118.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-2, complete cds.).
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>M32386-1|AAA28117.1| 63|Caenorhabditis elegans protein (
C.elegans metallothionein-like protein (MT-Ce) mRNA,
clone MTCe-1, complete cds.).
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>D17365-1|BAA04181.1| 63|Caenorhabditis elegans metallothionein-II
protein.
Length = 63
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = -2
Query: 435 KDKNTTANDLDKPVDYENKEECFQIGHSCTNHKDCCTNACLGYAK 301
K++N + N K D + + C Q + K CC + C G K
Sbjct: 8 KNQNCSCNTGTKDCDCSDAKCCEQYCCPTASEKKCCKSGCAGGCK 52
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 378 EECFQIGHSCTNHKDCCTNACLGYAKKCVSG 286
+EC H+C H D C + GY KC SG
Sbjct: 667 DECALGRHTCDPHAD-CIDTHQGYTCKCRSG 696
>AF022978-7|AAG24177.2| 403|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 131 protein.
Length = 403
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 547 QTKLGHN---VSCSTCTLHCFCRRIRDWKCNKGKCRNFKRKG*KYYCK 413
Q GH+ +SC C F RR D K ++ KC + G Y+CK
Sbjct: 15 QNGQGHHFGVISCRACA--AFFRRAADSKWSRMKCLSKYCDGKTYHCK 60
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 59 DPTFCR*PSRLDSPQPSYTPYPKNQKLNWNIFHISSRNRGAPNK 190
+P FC P +L P P + P+N + + + + APNK
Sbjct: 177 NPNFCTDPPKLHDPPPPHPSAPQNL-----LTQLIQKKKDAPNK 215
>Z66524-7|CAA91419.2| 626|Caenorhabditis elegans Hypothetical
protein T13H5.3 protein.
Length = 626
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 198 LKYILLYYFVIDT*CLIK*TTSFLSAFTRTLKRISSHNPDTHSCNSPYGWYRNVQSENIL 377
L +++ +FV+D+ +K A +K ++S +PD + GW N Q ++L
Sbjct: 54 LTHLVFAFFVVDSDGSVKLEGDAAKARLEHVKEVASRHPDLKLLYAVGGW-ENSQYFSVL 112
Query: 378 LYFHNPR 398
H+ R
Sbjct: 113 TADHSRR 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,528
Number of Sequences: 27780
Number of extensions: 317565
Number of successful extensions: 986
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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