Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c06
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   4.0  
01_06_1092 + 34469732-34470118                                         28   5.3  
11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619           27   9.3  
08_02_0610 + 19307537-19308011,19308187-19310846                       27   9.3  

>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 352  HSLRGSRCCT*YRHCRRPASSRACTCTKGI 441
            H+ + SRCC  Y  C RP  SR+C C+  I
Sbjct: 1032 HTSQASRCCRSYVKCSRP--SRSC-CSHSI 1058


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 460 IVDGPSKYPSCT--CTREMKPVCGSDGITYNNDC 365
           + DG S+   C   C R   PVCG+DG+TY   C
Sbjct: 46  VSDGGSEAQLCPVRCFRP-DPVCGADGVTYWCGC 78


>11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619
          Length = 260

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 108 CQSCGILLNKKRSFSLSMKAVICRSKHCP 194
           C  C + +N   S+  ++  + CR+KHCP
Sbjct: 233 CSGCELSMNTHASY-YAVVNMCCRAKHCP 260


>08_02_0610 + 19307537-19308011,19308187-19310846
          Length = 1044

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 288  SSTLGRKG-TTTEYDPCNRTAYASRT 214
            ++T GR G TTT  +PC  T+ ASRT
Sbjct: 940  AATSGRTGPTTTTANPCTCTSRASRT 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,921
Number of Sequences: 37544
Number of extensions: 305535
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)