Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12c06
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 55 5e-08
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 50 2e-06
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 50 2e-06
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 40 0.001
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.7
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.7
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 29 2.7
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 6.3
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.3
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 6.3
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 28 6.3
U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical pr... 27 8.4
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = -1
Query: 466 VKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCADK 296
+ + G S P C C ++PVCG+D +TYNN C L C + L Y G C DK
Sbjct: 7 ILLFTGFSPPPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDK 63
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = -1
Query: 607 PACHCXYDLNQVCGSDNHTYDXXXXXXXXXATNPGLSILYSGLCADEVKIVDGPSKYPSC 428
P C C + VCG+DN TY+ TN L Y+G C D+ +
Sbjct: 17 PDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKE----------- 65
Query: 427 TCTREMKPVCGSDGITYNNDC 365
C + P+C + G T+ NDC
Sbjct: 66 -CEKVGTPICDNFGETHINDC 85
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 433 SCTCTREMKPVCGSDGITYNNDCLLN---CATINDSRLGIEYYGPCAD 299
S C P+CG++G+T+ N C L C + N S + + Y G C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESAN-STIEVAYTGMCCD 815
Score = 35.5 bits (78), Expect = 0.032
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -1
Query: 424 CTREMKPVCGSDGITYNNDCLLNCATINDSRLGIEYYGPCAD 299
CT + P+C SD TY N C DS L + + G C++
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE 631
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -1
Query: 427 TCTREMKPVCGSDGITYNNDCLLNCATINDSRLGI-----EYYGPC 305
TC+R++KPVC T+ N C N +LGI Y PC
Sbjct: 374 TCSRDVKPVCDEANNTHQNLCHFQQYNCNMRKLGIRSPYLRYLRPC 419
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -1
Query: 406 PVCGSDGITYNNDCLLN---CATI--NDSRLGIEYYGPCADK 296
PVC ++G+T+ N CL++ C + N + + Y G C ++
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ 972
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 625 EGNVGFPACH--CXYDLNQVCGSDNHTYDXXXXXXXXXATNPGLSILYSGLCADEVKIVD 452
E + AC C D + +C SD TY+ + L +L+ G C++ +D
Sbjct: 578 ENCISKEACQMPCTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE---CLD 634
Query: 451 GPSKYPS 431
P P+
Sbjct: 635 SPCALPA 641
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Frame = -1
Query: 595 CXYDLNQVCGSDNHTYDXXXXXXXXXA--TNPGLSILYSGLCADEVKIVDGPSKYPSCTC 422
C + +CG++ T+ N + + Y+G+C D C
Sbjct: 772 CDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDT-------------NC 818
Query: 421 TREMKPVCGSDGITYNNDC 365
+ PVC S G T+ N C
Sbjct: 819 PSDFSPVCDSKGSTHQNIC 837
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 460 IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 305
+VDG K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 456 VVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -1
Query: 436 PSCTCTREMKPVCGSDGITYNNDCLLNCATINDSR 332
P+C + P+CGSDGI YNN C LN + D R
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQR 717
Score = 37.1 bits (82), Expect = 0.010
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Frame = -1
Query: 613 GFPAC---HCXYDLNQVCGSDNHTY-DXXXXXXXXXATNPGLSILYSGLC-ADEVK---- 461
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 459 GKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKC 518
Query: 460 -----IVDGPSKYPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSRLGI- 323
V G ++ C C E K VCG+DG+TY+++C + + + S+ +
Sbjct: 519 DFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMT 578
Query: 322 EYYGPC 305
+ G C
Sbjct: 579 AFEGKC 584
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Frame = -1
Query: 478 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLLNCATIN 341
C K V PS +P C C + VCGSDG TY+N C L N
Sbjct: 845 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCELKMFACN 900
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 451 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 332
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 310 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 353
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -1
Query: 448 PSKYPSCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 305
P + C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 385 PDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 437
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -1
Query: 460 IVDGPSKYPSCTCTREMKPVCGSDGITYNNDC-LLNCATINDSRLGIEYYGPC 305
+VDG K +CT E K VCGSDG TY+N+C L N A + + ++Y C
Sbjct: 464 VVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 37.1 bits (82), Expect = 0.010
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Frame = -1
Query: 613 GFPAC---HCXYDLNQVCGSDNHTY-DXXXXXXXXXATNPGLSILYSGLC-ADEVK---- 461
G P C C + +VCGSD TY + + + Y+ C A ++K
Sbjct: 467 GKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSACEACKLKKEKC 526
Query: 460 -----IVDGPSKYPSCTCT--------REMKPVCGSDGITYNNDCLLNCATINDSRLGI- 323
V G ++ C C E K VCG+DG+TY+++C + + + S+ +
Sbjct: 527 DFYSACVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMT 586
Query: 322 EYYGPC 305
+ G C
Sbjct: 587 AFEGKC 592
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Frame = -1
Query: 478 CADEVKIVDGPSKYPSCTCTREMK----------PVCGSDGITYNNDCLL 359
C K V PS +P C C + VCGSDG TY+N C L
Sbjct: 784 CFHGAKCVPSPSSFPDCICPQSCNMNHLGIVANMTVCGSDGTTYSNLCEL 833
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -1
Query: 451 GPSKYPSCTC----TREMKPVCGSDGITYNNDCLLNCATINDSR 332
G + P C C T VCG+DG TY N+C L A + +
Sbjct: 318 GVDRRPECKCSEQCTMNSAHVCGTDGKTYLNECFLKLAACKEQK 361
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -1
Query: 448 PSKYPSCTCTRE----MKPVCGSDGITYNNDCLL---NCATINDSRLGIEYYGPC 305
P + C C M+PVC ++G T++N+C + +C T S + +++ G C
Sbjct: 393 PDRTAECECPNRCEDVMRPVCATNGETFDNECEMKKKSCET--KSMIKVKHQGTC 445
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 433 SCTCTREMKPVCGSDG---ITYNNDCLLNCATINDSRLGIEYYGPC 305
+C+C E+ PVC +G TY+N C+ CA N L + Y G C
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSC 69
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = -1
Query: 457 VDGPSKYPSCT--CTREMKPVCGSDGITYNNDC-LLNCATINDSRLG----IEYYGPCAD 299
+D + SCT C E PVC G T+ N C LN + ++L ++Y G C +
Sbjct: 112 MDSSQEKCSCTAPCPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE 171
Score = 27.5 bits (58), Expect = 8.4
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Frame = -1
Query: 511 NPGLSILYSGLCADEVKIVDGPSKYPSCTCTREMKPVCGSDGITYNNDC---LLNCAT-- 347
N L + YSG+C +++ C+ + VC S+G T+ + C + C
Sbjct: 158 NESLEVDYSGVCCEDM-----------CSAGQTSLTVCDSEGNTHTDICSFYIAKCRQMR 206
Query: 346 --INDSRLGIEYYGPCADK 296
I RL I GPC K
Sbjct: 207 RGIGKKRLQIAGVGPCKPK 225
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 496 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 341
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 496 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 341
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 496 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 341
I + L A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAALLASSLLLVEGTSIRDKRQSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQN 58
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = -1
Query: 496 ILYSGLCADEVKIVDGPS---KYPSCTCTREMKPVCGSDGITYNNDCLLNCATIN 341
I + + A + +V+G S K SC C +++P C TY +C+ N
Sbjct: 4 IAIAAILASSLLLVEGTSIRDKRQSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQN 58
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 370 RCCT*YRHCRRPASSRACTCTKGICWG 450
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 370 RCCT*YRHCRRPASSRACTCTKGICWG 450
RCCT CR +R CTC + C G
Sbjct: 97 RCCT---CCRTCCCTRCCTCCRPCCCG 120
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 370 RCCT*YRHCRRPASSRACTCTKGICWG 450
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 370 RCCT*YRHCRRPASSRACTCTKGICWG 450
RCCT CR +R CTC + C G
Sbjct: 98 RCCT---CCRTCCCTRCCTCCRPCCCG 121
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 370 RCCT*YRHCRRPASSRACTCTKGICWG 450
RCCT CR +R CTC + C G
Sbjct: 99 RCCT---CCRTCCCTRCCTCCRPCCCG 122
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 287 DYNLISARPVVFDAESGVIDCG 352
DY++I+ +PVV D SGVI G
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAG 23
>U97001-6|AAB52257.2| 374|Caenorhabditis elegans Hypothetical
protein K08B12.1 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 498 LRPGFVAAAQFNRQALSYVWL 560
L P + AAQ+NRQA+ Y +L
Sbjct: 297 LNPAVLTAAQYNRQAMHYRYL 317
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,557,280
Number of Sequences: 27780
Number of extensions: 265461
Number of successful extensions: 625
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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