Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c05
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.15 
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   2.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    27   3.3  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.7  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   7.6  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.6  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   10.0 
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   10.0 

>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 320 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 213
           +++ YN+   M TS+C+C++  +  YGGN A    E
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 112 AFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLS 228
           + T  +S+  S  S L  K  T FSY AG  + CS+ +S
Sbjct: 117 SLTRSASATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVS 155


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -1

Query: 260 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 156
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 323 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 228
           +HN  +N + + S ++ +  +R+ V+  GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
 Frame = +3

Query: 519 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDXIVNYI 623
           W+VLF + L+  ++ P     V  LHGV + VN  + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 177 RPVLHLQPRIQRCLGARYDRERL 109
           RP +H  P+I R LG  YD   L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
 Frame = -1

Query: 371 SWKFITLWENNRVYFKAHNTKYNQYL-KMSTSTCNCNARDRVVYGGNSADSTREQWFFQP 195
           +WK I+L E  R+++        QYL K S+   N + +    YG +   +  E     P
Sbjct: 538 TWKSISLVERARIHYLTAFKPPKQYLPKCSSPKDNRDLKVFADYGSDKLPTVEESLRNSP 597

Query: 194 AKYENDVLFFIYNREFNDALELDTIVNASGDR 99
              + D L +I+      +L  D+IVN   ++
Sbjct: 598 ---KPDTL-WIHLTVIGHSLVQDSIVNGDFEK 625


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 341 NRVYFKAHNTKYNQYLKMSTSTCNCNA 261
           +R +F   + KYN+   + TST   NA
Sbjct: 35  SRTFFSPTHIKYNRLSTLDTSTSTANA 61


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 115 TPRETARPLDTTVKSPVFLKSTRGSLHLSK 26
           TPRETA+ L   + +P      R SL   K
Sbjct: 207 TPRETAKELRNLIATPPCFAQARSSLTTPK 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,210
Number of Sequences: 5004
Number of extensions: 46498
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)