Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c02
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   0.81 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    28   1.1  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   7.5  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    25   10.0 

>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 0.81
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 288 ASNYLTSRGQ*NDR*INNRMQCNFINHVTTSITNGKFSNHHNLEEYISVQITN 446
           +SNY TS         +N    N IN VTTS+++G  S H      IS+  TN
Sbjct: 130 SSNYSTSANS------SNFDNANVIN-VTTSVSSGSTSTHSKRSSGISLSYTN 175


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 466  KSLHLFQLVICTEMYSSKLW*FENFPLVIDVVT*LI 359
            K+LHL +    +  Y  KLW F NF   I ++  L+
Sbjct: 979  KALHLARFCTKSSHYRKKLWDFYNFSCTITILMLLL 1014


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 546 VIKNVVKYSLYKCLESCLTIKSLI 475
           +I+N+ K ++Y  + SC+TI  LI
Sbjct: 236 LIRNMSKANIYTTILSCITISLLI 259


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 341 QNAVQFYQSCYNIY 382
           Q+ VQ YQSCY ++
Sbjct: 755 QSQVQLYQSCYKLF 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,939
Number of Sequences: 5004
Number of extensions: 37915
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)