Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c02
         (558 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011268-1|AAH11268.2|  376|Homo sapiens phytanoyl-CoA 2-hydroxy...    30   6.3  
AY358162-1|AAQ88529.1|  330|Homo sapiens EELP6309 protein.             30   6.3  
AL834339-1|CAD39006.1|  376|Homo sapiens hypothetical protein pr...    30   6.3  
AL365474-1|CAB97028.1|  327|Homo sapiens hypothetical protein pr...    30   6.3  
AK054956-1|BAB70832.1|  376|Homo sapiens protein ( Homo sapiens ...    30   6.3  

>BC011268-1|AAH11268.2|  376|Homo sapiens phytanoyl-CoA
           2-hydroxylase interacting protein-like protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 5   VHHKIY*SNLSCDDFKLCRSM----KDYIVVEFITKSNKFGKNGSE 130
           V H I  SN++CD FK+   M    KD I   FI  + K  KN ++
Sbjct: 52  VPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNK 97


>AY358162-1|AAQ88529.1|  330|Homo sapiens EELP6309 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 5   VHHKIY*SNLSCDDFKLCRSM----KDYIVVEFITKSNKFGKNGSE 130
           V H I  SN++CD FK+   M    KD I   FI  + K  KN ++
Sbjct: 6   VPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNK 51


>AL834339-1|CAD39006.1|  376|Homo sapiens hypothetical protein
           protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 5   VHHKIY*SNLSCDDFKLCRSM----KDYIVVEFITKSNKFGKNGSE 130
           V H I  SN++CD FK+   M    KD I   FI  + K  KN ++
Sbjct: 52  VPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNK 97


>AL365474-1|CAB97028.1|  327|Homo sapiens hypothetical protein
           protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 5   VHHKIY*SNLSCDDFKLCRSM----KDYIVVEFITKSNKFGKNGSE 130
           V H I  SN++CD FK+   M    KD I   FI  + K  KN ++
Sbjct: 26  VPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNK 71


>AK054956-1|BAB70832.1|  376|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30394 fis, clone BRACE2008380. ).
          Length = 376

 Score = 29.9 bits (64), Expect = 6.3
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +2

Query: 5   VHHKIY*SNLSCDDFKLCRSM----KDYIVVEFITKSNKFGKNGSE 130
           V H I  SN++CD FK+   M    KD I   FI  + K  KN ++
Sbjct: 52  VPHNIKISNITCDSFKISWEMDSKSKDRITHYFIDLNKKENKNSNK 97


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,413,880
Number of Sequences: 237096
Number of extensions: 1140679
Number of successful extensions: 1080
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)