Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c02
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    27   9.1  

>U80454-6|AAB37879.1|  786|Caenorhabditis elegans Hypothetical
           protein T16A1.2 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 382 SLMGNFQITII*KNTFLYKLPIGTDEVI 465
           SL GNF+ T++   TF YK+    D+++
Sbjct: 607 SLFGNFRHTVLEIATFFYKVDTWADQIV 634


>U80445-6|AAB37797.2|  575|Caenorhabditis elegans Hypothetical
           protein C50F2.1 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -1

Query: 117 FPNLLDLVINSTTM*SFIDLHNLKSSQ 37
           FPNLL L I+ST + +   + NLK+ Q
Sbjct: 118 FPNLLSLDISSTNITNLFGIGNLKTLQ 144


>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 141 YQCSSDPFFPNLLDLVINSTTM 76
           Y   SDPF   L+D+ +NST M
Sbjct: 199 YVLISDPFLAMLIDIAVNSTYM 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,225
Number of Sequences: 27780
Number of extensions: 208610
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)