Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12c02
         (558 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   1.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   6.4  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   8.4  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 369 VTTSITNG-KFSNHHNLEEYISVQITNWNR 455
           + +S++N  K+SN++N   Y +    N+N+
Sbjct: 314 IISSLSNNYKYSNYNNYNNYNNNNYNNYNK 343


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -1

Query: 150 KFYYQCSSDPFFPNLLDLVINSTTM*SFIDL 58
           + YY C  +P+      ++I   T+  F +L
Sbjct: 208 EIYYNCCPEPYIDITFVVIIRRRTLYYFFNL 238


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 NFLTILLCHRFSCEQLCFKIHE 211
           N+L +++C   +C+ +   IH+
Sbjct: 3   NWLLLIVCLSIACQDVTSAIHQ 24


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 195 HNCSQLKR*HNNMVRKFYY 139
           HN +  K  +NN  +K YY
Sbjct: 91  HNNNNYKYNYNNNCKKLYY 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,523
Number of Sequences: 438
Number of extensions: 2625
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)