Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b21
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    33   0.003
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
 Frame = -3

Query: 664 LDVLVNNAGIIETGTIENTSLAQYDRLMNTNVRSIYYLTMLAVPHLLESKGXXXXXXXXN 485
           +D+L+NNA I    T++N  +  + ++ + N+  +  + +  V  L++ KG         
Sbjct: 85  IDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCM-IQEVLKLMKKKGINNGIIVNI 143

Query: 484 GIRSFPGVL-------AYNISKASVDQFTRCVALELA--PKGVRVNCVNPGVILTEL 341
              S   +L       AY  SK ++   T C+  ELA     ++V  ++P ++ T++
Sbjct: 144 NDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDM 200


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 107 GTLILFHDSSSNLARTHSMTSTVDWHTGTSDITCQVAGKECN 232
           G+ + F +    LAR   +      H GT+    QV GK  N
Sbjct: 385 GSEVKFDEHGDGLARYEILNFRKSEHNGTNGYQYQVVGKWFN 426


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 107 GTLILFHDSSSNLARTHSMTSTVDWHTGTSDITCQVAGKECN 232
           G+ + F +    LAR   +      H GT+    QV GK  N
Sbjct: 475 GSEVKFDEHGDGLARYEILNFRKSEHNGTNGYQYQVVGKWFN 516


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 638 TGIIH*NVQLXRNGQW 685
           TG+   +++  RNGQW
Sbjct: 48  TGVATVDIEAVRNGQW 63


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 182 HTGTSDITCQVAGK 223
           HTG    TC + GK
Sbjct: 226 HTGEKPYTCDICGK 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,667
Number of Sequences: 438
Number of extensions: 4379
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)