Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b19
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 41 2e-04
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 29 0.64
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 28 1.1
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 28 1.5
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.5
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 1.9
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 1.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 1.9
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 3.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.5
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 4.5
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 4.5
SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase |Sch... 26 4.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 5.9
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 5.9
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 5.9
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 25 7.8
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 25 7.8
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 7.8
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 25 7.8
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 40.7 bits (91), Expect = 2e-04
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Frame = -3
Query: 623 EALKQFCTEWPNLLNSEESIEKHYPLEII--SSDYCHASPSIRNPLARVVILRVQLADLK 450
E ++ E P L +S +K +I SD +S NP VV +V L
Sbjct: 85 ELYRKAAYELPGLTPYTQSFKKPADSQIFRFESDVQMSSFEKMNPKV-VVTFKVTNIPL- 142
Query: 449 LDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHES 294
L++ + LVG RY+P+ DLV I++D+ + +QN ++ +LT+ ES
Sbjct: 143 LEEKQRHVLRLLVGPRYNPEEDLVRISSDKYSSALQNKYHLIKILTSLIEES 194
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 617 LKQFCTEWPNLLNSEESIEKHYPLEIISSDYCH-ASPSIRNPLARV 483
L F + P L+ S+ I + ISSD C AS +NPLA+V
Sbjct: 122 LINFSEDKPRLVWSQNRISDSFLSSTISSDACFIASIETKNPLAKV 167
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 410 GDRYDPKT--DLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYD 237
G R P + DL + D + D+ + + HE N++DW +E D++
Sbjct: 288 GKRLSPSSNFDLNNLGGDDDLRSESSSDFESAPASILEHEPTNWDDWVQEADVTDIDSLP 347
Query: 236 WDN 228
W N
Sbjct: 348 WHN 350
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 299 ESWNFEDWEKEKTEDDMEYY-DWDNNASKRSLIDWYLRVKNELKIMNDEEYKAF 141
ESWN +W +E ++D+E+Y W+ ++ + L + ++ + EE +A+
Sbjct: 708 ESWN--EWMREVKDEDLEFYKKWEKLLNQEERL--LLLKRGDVLTFDTEELEAY 757
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -3
Query: 515 SPSIRNPLARVVILRVQLADLK--LDKHATDKFKRL-VGDRYDPKTDLVTITADRCPTKV 345
S + +P R + V +D + LD+ + RL + R+ P DL D C T V
Sbjct: 617 STELEDPYLRAIFAYVSNSDWRDVLDEVSLSLKDRLGIALRFLPDDDLSNYLCDLCHTTV 676
Query: 344 QNLDYVNYLLT 312
Q+ D LLT
Sbjct: 677 QSGDPEGLLLT 687
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 695 KSECRINEIPNFLHLTPPVIKSQCEALKQFCT 600
++E R+NE+ N L IKS+C + CT
Sbjct: 692 RNEARLNELANKLWQRNSNIKSKCRRVVSLCT 723
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 457 TSNSINMQQTSLRGWSVTGTTQKQI 383
TSN +N+ + S+R W V+ ++ I
Sbjct: 955 TSNCVNLSENSIRAWLVSSAVERLI 979
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 233 PSHNTPCRPRSSPSPNLQNSTTHGSMQSTNN*HSPS 340
P+ +P P P++ +TT S +S + H+P+
Sbjct: 261 PAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPT 296
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = -3
Query: 575 EESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYD 396
E+ I +H + II ++ H + L + V++ L + K A +FK GD+ +
Sbjct: 1051 EKYILEHCGIRIIEAELFHGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFKLRHGDQVE 1110
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.4
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = -3
Query: 605 CTEWPNLLNSEESIEKHYPLEIISSD-YCHASPSIRNPLARVVILRVQLADLKLDKHATD 429
C + N + S LEII SD C SIR L R +V + + LD T
Sbjct: 4594 CFNYANTASHHRSNSDIRQLEIIISDGICEDHDSIRKLLRRAQEEKVMIVFVILDNVNTQ 4653
Query: 428 KFKRLVGDR---YDPKTD 384
K ++ + YD K D
Sbjct: 4654 KKSSILDIKKVYYDTKED 4671
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 572 ESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKH 438
E+ + H L + Y H SPSI P A +L QL D L H
Sbjct: 3 EAEQVHQSLRSLVLSYAHFSPSILIP-ASQYLLAAQLRDEFLSLH 46
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 76 PSFIYFDTDALYWAPFSIWLISNALYSSSFMIFNSFLTRRYQSIKLLFEAL 228
P ++FD + W + + SNA +SF+ F + + LF+ L
Sbjct: 315 PDLLFFDVQKISWITLAHVVYSNARAQNSFVDSTFFDIKNTDVLTCLFDYL 365
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = -3
Query: 257 DDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDEEYKAFD 138
++ E YDW ++ I+ YL + NDE + +F+
Sbjct: 517 NNRENYDWARWNNQTKQIECYLCYTESSNVSNDEPHPSFE 556
>SPACUNK4.15 |||2',3'-cyclic-nucleotide 3'-phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 363 IRCDRH*ICFWVVPVTDQPLKLVCCMFIEFEVC 461
+ + H C W+VP ++L F+++ VC
Sbjct: 22 VSSEDHCYCVWLVPAISSDIELRYRTFVDWAVC 54
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 209 NSSLKHYYPSHNTPCRPRSSPSPNLQNSTTHGSMQSTNN*HSPS 340
N +L PSH++ SP+P + + S+ S NN PS
Sbjct: 307 NPNLSQMGPSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPFPS 350
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 128 IENGAQYKASVSKYMNEGENPQTVQEYSIAVRKLF 24
+E+GA + + +N E P+T++ I V K+F
Sbjct: 95 VEHGATWAKLLIALLNRPETPKTLEIAMITVSKMF 129
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 194 DTNQSNSSLKH---YYPSHNTPCRPRSSPSPNLQNSTTHGSMQSTNN*HSPSF 343
DTN++ ++K+ Y P ++ + + + S+T QST++ SPSF
Sbjct: 528 DTNKTQHNIKYIDSYVPEYSIARQSANQKTNEQHPSSTSLHQQSTSDLKSPSF 580
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 230 YPSHNTPCRPRSSPSPNLQ-NSTTH 301
YP +NT RP SP+ Q N+T H
Sbjct: 13 YPPYNTYTRPNYSPNNGSQSNNTVH 37
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = -3
Query: 365 DRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYDWDN 228
DRCP + + + +TA H+S + +E+ + D Y++++
Sbjct: 165 DRCPPTLHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYED 210
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 152 YKAFDISQIENGAQYKASVSKYMNEGENPQTV 57
YKA+++ +IENG+ +A Y++E TV
Sbjct: 43 YKAYELDKIENGSDIQA----YLHEKTKQSTV 70
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 278 WEKEKTEDDMEYYDWDNNASKRSL 207
WEK+ +D Y+ NNA++ SL
Sbjct: 66 WEKDTNKDATVSYELSNNANEGSL 89
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -3
Query: 584 LNSEESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADL 453
+NS ES HY +E+ S Y P I V + ++A L
Sbjct: 170 MNSNESSFLHYLVEVWSIFYLEILPYIEATFLPVTFAKFEIAQL 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,477
Number of Sequences: 5004
Number of extensions: 57047
Number of successful extensions: 226
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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