Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b19
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1234 + 25437340-25437502,25437983-25438381,25441198-254416... 39 0.004
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 33 0.22
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 31 1.2
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700... 30 1.5
09_03_0031 + 11735431-11735728,11736704-11737041,11737150-117372... 29 3.5
05_03_0295 - 11830767-11831309,11831820-11831951,11832322-118323... 29 4.7
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 28 8.1
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224... 28 8.1
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489... 28 8.1
04_04_0033 + 22295974-22296290,22296441-22296684,22296797-222969... 28 8.1
>08_02_1234 +
25437340-25437502,25437983-25438381,25441198-25441615,
25442353-25442542
Length = 389
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = -3
Query: 500 NPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADRCPTKVQN 339
+P R V L V + +L L +HA + + +VG+RY+ D +TIT++R + +N
Sbjct: 281 HPKNRKVKLSVTVKELGLSRHAFRRLREVVGNRYNSGKDELTITSERFEHREEN 334
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -3
Query: 284 EDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDE---EYKAFD-ISQIENG 117
+D+ K D+ Y D DNN+ ++D R KN LK D+ + +A D + ++E
Sbjct: 404 DDFANWKDVIDLNYLDMDNNSKLEGMMD-LQRAKNILKFELDKRLMDLQAADAVQKMEEA 462
Query: 116 AQYKASVSKYMNEGENP 66
++++ V +NP
Sbjct: 463 SRFRVQVPSISTGRQNP 479
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/128 (24%), Positives = 54/128 (42%)
Frame = -3
Query: 599 EWPNLLNSEESIEKHYPLEIISSDYCHASPSIRNPLARVVILRVQLADLKLDKHATDKFK 420
+W NL S E + K +++ + P++ + +V+L LA+ +K A K
Sbjct: 405 DWVNLQESFEKLNKQLE-KVVRVNESSTVPNMY--IKALVLLEDFLAEALANKEAKKKMS 461
Query: 419 RLVGDRYDPKTDLVTITADRCPTKVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYY 240
++ + A + K N Y N L+ C FED + E +DD E
Sbjct: 462 ---------SSNAKALNAMKQKLKKNNKQYEN-LIQECREHPERFEDDDVEDKDDDDETE 511
Query: 239 DWDNNASK 216
D D++A +
Sbjct: 512 DEDSDAEE 519
>03_03_0090 +
14367033-14367279,14367402-14368205,14368314-14370039,
14370135-14370219,14370398-14370457,14370744-14370836
Length = 1004
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 215 SLKHYYPSHNTPCRPRSSPSPNLQNSTTHGSMQST 319
S+ ++PSH++ + SPS N+QN+ HG + +
Sbjct: 771 SVVSFHPSHSSARQCARSPSCNMQNTGDHGETEGS 805
>09_03_0031 +
11735431-11735728,11736704-11737041,11737150-11737285,
11737477-11737613,11737701-11737824,11738859-11739364
Length = 512
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 191 EDTNQSNSSLKHYYPSHNTPCRPRSSPSPNLQNSTTHGSMQSTNN 325
ED + +P + P PRS + +++THG+ +ST N
Sbjct: 62 EDATVATGCCIRLWPMGSCPPPPRSKVDTSTSSASTHGAEKSTEN 106
>05_03_0295 -
11830767-11831309,11831820-11831951,11832322-11832375,
11842285-11843169
Length = 537
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3
Query: 515 SPSIRNPLARVVILRVQLADLKLDKHATDKFKRLVGDRYDPKTDLVTITADR 360
SPS R L+ + + QLAD+ LD R + DR DPKT + I+ ++
Sbjct: 382 SPSHRQALSGLGL--GQLADMTLDGFEQPDLIRWLMDRTDPKTMTIQISENK 431
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = -3
Query: 284 EDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRVKNELKIMNDE---EYKAFD-ISQIENG 117
+D+ K D+ Y D DNN+ ++D R KN LK D + +A D + ++E
Sbjct: 1451 DDFANWKDVIDLNYLDMDNNSKLEGMMD-LQRAKNILKFELDRRLMDLQAADAVQKMEEA 1509
Query: 116 AQYK 105
++++
Sbjct: 1510 SRFR 1513
>10_01_0209 +
2236530-2237301,2239196-2239297,2239535-2239716,
2240210-2240420,2240526-2240766,2240861-2241011,
2241116-2241424
Length = 655
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 350 KVQNLDYVNYLLTACYHESWNFEDWEKEKTEDDMEYYDWDNNASKRSLIDWYLRVK 183
K+Q+ + V LL C HE +E + ++ + +D N KR+L+DWY R++
Sbjct: 386 KLQHRNLVR-LLGCCSHEEEKILVYEFLPNKS-LDLFIFDEN--KRALLDWYKRLE 437
>05_07_0247 +
28643862-28644310,28645151-28645207,28645644-28648950,
28649069-28649144,28649356-28649426,28649524-28649589,
28649677-28649766,28649874-28650050,28650513-28650548
Length = 1442
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Frame = -3
Query: 584 LNSEESI-EKHYPLEIISSDYCHASP----SIRNPLARVVILRVQLADLKLDKHAT---- 432
+NSE+S+ +KH + +D+C S S+ P KL K
Sbjct: 473 MNSEDSLLDKHQKASAVRTDHCDDSGKRALSLEKPQHMQSCTAPNQTSSKLGKLGNWTSG 532
Query: 431 DKFKRLVGDRYDPKTDLVTITADRC 357
D+F L G+ KTD D+C
Sbjct: 533 DEFYELTGEDQKQKTDAAVGEEDKC 557
>04_04_0033 +
22295974-22296290,22296441-22296684,22296797-22296976,
22297749-22297979
Length = 323
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 284 EDWEKEKTEDDMEYYDW---DNNASKRSLIDWYLRVKNELKIMNDEEYKAFDISQIE 123
+ + KE+ ++++E +DW D + K S I RV D E+ + D+ IE
Sbjct: 263 KSYRKERLKENLEIFDWELTDEDRLKISQIPQRKRVTAASLFSPDGEFTSVDLPDIE 319
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,904,210
Number of Sequences: 37544
Number of extensions: 322540
Number of successful extensions: 1012
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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