Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b19
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    27   0.23 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 58  TVCGFSPSFIYFDTDALYWAPFSIWLISNALYSSSFM 168
           T C    + IY D  + ++ PFS +LI N +Y S+F+
Sbjct: 348 TCCQGRATAIYIDKVSRFFFPFS-FLILNVVYWSTFL 383


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 197 YLRVKNELKIMNDEEYKAFDISQIEN 120
           YLR +N+L+ + +E  +A ++  +EN
Sbjct: 12  YLRNRNQLQHVLEETQQALELINLEN 37


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +2

Query: 224 HYYPSHNTPCRPRSSPSPNLQNSTTHGSMQSTNN 325
           +Y   HN+P    SSP  +  +++T  + ++T++
Sbjct: 54  NYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSS 87


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 269 EKTEDDMEYYDWDNNASK-RSLIDWYLRVKNELKIMN 162
           E   +D++   W+N  S  R+L D Y  VKN L   N
Sbjct: 373 EYNNNDLDTKKWNNKISALRALNDLY-NVKNTLDSYN 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,365
Number of Sequences: 438
Number of extensions: 3727
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)