Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b18
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   134   5e-33
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   4.2  
SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces po...    25   4.2  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    25   7.3  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.3  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    24   9.7  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    24   9.7  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    24   9.7  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  134 bits (325), Expect = 5e-33
 Identities = 64/140 (45%), Positives = 87/140 (62%), Gaps = 2/140 (1%)
 Frame = -1

Query: 416 LSPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRL 243
           LSP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L
Sbjct: 116 LSPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGL 175

Query: 242 FLTILLGFYFTILQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHL 63
           ++TI L F F   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+      
Sbjct: 176 YMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIY 235

Query: 62  NNHFSKNHHFGFEAAA*Y*H 3
             H +  HH GFE    Y H
Sbjct: 236 TYHLTNTHHNGFECGIYYWH 255


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 337 NKGIWNGLNGVILEGGHILPISIFGDNLLWKKAQKNLI 450
           N GIW  +  V++   ++L +  FG+   W  A K L+
Sbjct: 158 NVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVKILV 195


>SPBC29A3.10c |atp14||F1-ATPase subunit H |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 278 IENNFSQTKQRLFLTILLGFYFTILQAYE 192
           +  ++S T  RL++ ++ G Y + L++Y+
Sbjct: 8   LSRSYSTTSPRLYVDVVQGLYISSLKSYK 36


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 427 SIEDYPQILKLEEYDPLQELHHL 359
           SIED   ++KLE+ DP+  + H+
Sbjct: 276 SIED-KSLIKLEDLDPVDSISHM 297


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 62  NNHFSKNHHFG 30
           NNHF+K HH G
Sbjct: 162 NNHFTKTHHQG 172


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 164 DRIYGSTFFIATGFHGIHVIIGTLFLLICYI 72
           +R YG+   IA  F  + VI    +L+ CY+
Sbjct: 94  ERRYGTLCTIAMFFGFLEVIPAIAYLIACYV 124


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -1

Query: 227 LGFYFTILQAYEYIE----ASFTIADRIYGSTFFIATGFHGIHVI 105
           L  YF+ L +YE +E     S T+ D +YG   +     H +  I
Sbjct: 131 LTIYFSTLLSYEKVENLIKKSLTVIDSLYGLLNYQINAQHSLGCI 175


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 328 IVFNKGIWNGLNGVILEGGHILPISIFG 411
           +  +K + NG+N +++EGG  L    FG
Sbjct: 173 VALDKLLQNGVNRIMVEGGAELLAKAFG 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,111
Number of Sequences: 5004
Number of extensions: 30505
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)