Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b17
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.4  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   5.8  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   7.7  

>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 6   IFKIGSLITSTMKELYDIIKNMYYLTSVTTISVVAY-YEPAFEISHFWRE 152
           +FKI  + TST KE Y   K M    SV T+ ++ +     F  SH +++
Sbjct: 244 LFKIIRMYTSTQKEYYASSKQMITTFSVITLLLLLFTIAIGFACSHNFKK 293


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 446 TTSASCFQVSSGIYVQLSIITKHHSVRKNINF 541
           TT     +  S +++   +++K H  RKNINF
Sbjct: 367 TTPFQQIKPPSQVFMSTGLLSKQHRPRKNINF 398


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 15  IGSLITSTMKELYDIIKNMYYLTSVTTISVVAYYEPAFEISHFWRETVMVQQY 173
           +G  I S + EL   ++ +  +      SV ++ + +FEIS    E  ++Q+Y
Sbjct: 745 LGYNIPSQLMELASCLQRIQLIAMCLIDSVQSFNDVSFEISKTEEERFLLQEY 797


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 479 RYSLGNMRPKSSNNEVEQYSEAS 411
           RYSL  +R   +N+ VEQ+SE S
Sbjct: 200 RYSLDVLRSSLNNSIVEQHSEVS 222


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 27  ITSTMKELYDIIKNMYYLTSVTTISV 104
           IT  +++L  ++KNM+Y T   + S+
Sbjct: 274 ITPYVQQLASLLKNMHYYTDTASFSI 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,302
Number of Sequences: 5004
Number of extensions: 50874
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)