Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b17
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0769 - 5745324-5746970                                           30   1.5  
02_05_0847 + 32183249-32183486,32184001-32184118,32184231-321843...    30   1.5  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    30   1.5  
11_06_0083 - 19894629-19894967                                         28   6.0  
02_05_0848 + 32195610-32195625,32196078-32197585                       28   6.0  
09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    28   7.9  

>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 24  LITSTMKELYDIIKNMYYLTSVTTISVVAYYEPAFE 131
           L+ S  +E YD +   YY  +  +  VVA Y+P+ +
Sbjct: 402 LVVSLKREYYDKLHGAYYTNATASGEVVAVYQPSHD 437


>02_05_0847 +
           32183249-32183486,32184001-32184118,32184231-32184376,
           32184591-32186080
          Length = 663

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  LITSTMKELYDIIKNMYYLTSVTTISVVAYYEPAFE 131
           LI S     Y+ I+ MYY     T  +VA Y+P+ E
Sbjct: 516 LIASLYSGYYEKIRGMYYENPTKTGEIVAVYQPSHE 551


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = -2

Query: 491 ERKCRYSLGNMRPKSSNNEVEQYSEASREPP 399
           E K     GN  PKSSNN     SE S +PP
Sbjct: 391 EAKAAPEFGNTLPKSSNNNSMLNSEQSSDPP 421


>11_06_0083 - 19894629-19894967
          Length = 112

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 371 YCCYYWYLSTGAHETPHCIVRPHYSTTS 454
           Y C YW     AH    CI R ++ST+S
Sbjct: 84  YVCQYWPEMDPAHGQDWCIPRNYWSTSS 111


>02_05_0848 + 32195610-32195625,32196078-32197585
          Length = 507

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 24  LITSTMKELYDIIKNMYYLTSVTTISVVAYYEPAFE 131
           L+TS   + YD I+ +Y+     T   VA ++P+ E
Sbjct: 361 LVTSLFPDYYDRIRGVYHARPTETGEYVAVHQPSHE 396


>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 362 NHFYC--CYYWYLSTGAHETPHCIV 430
           +HFYC  C+  Y+S   ++ P C+V
Sbjct: 152 SHFYCHECWEGYISAAVNDGPGCLV 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,397,073
Number of Sequences: 37544
Number of extensions: 304925
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)