Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b16
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy... 134 8e-33
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ... 35 0.009
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 29 0.58
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 28 1.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 3.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 5.4
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 9.4
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 25 9.4
>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 349
Score = 134 bits (325), Expect = 8e-33
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G TAY G I +PK GET GQ+AK MG V+G G+DEK + +
Sbjct: 142 GMPSQTAYCGLKHIGKPKAGETIYISAASGAVGQMAGQLAKAMGLHVVGSVGSDEKFK-I 200
Query: 463 IQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGAI 284
++G+D V NYK L P G+D YF+NVGGE VL +M GR+ CGAI
Sbjct: 201 CLDSGYDSVFNYKKESPFKALPRLCPKGIDIYFENVGGETMDAVLENMNLQGRIIFCGAI 260
Query: 283 STYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNL-AWVKSGQLKYKE 107
S YN N ++K + ++ K L ++GF V + E + + + G++KYK
Sbjct: 261 SQYNNPNPYRVKNLGM---VLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKC 317
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ +G ES +AFIG+ +G N GK+IVK+
Sbjct: 318 DVYDGLESAPEAFIGMLQGKNSGKTIVKI 346
>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 423
Score = 35.1 bits (77), Expect = 0.009
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -2
Query: 526 AKIMGCV-VIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGG 350
A+I+G VIG E+ + Q+ GF + + +D+P + NGVDC + G
Sbjct: 241 AQILGASKVIGIEVVPERIELARQKFGFTVIDRNEVSDVPKKIMELVSNGVDCAIEASGF 300
Query: 349 ELSSVVL 329
S+ +L
Sbjct: 301 RFSTSIL 307
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.1 bits (62), Expect = 0.58
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +2
Query: 299 RNSTKSSHVR*NYTAELSTHIIKIAVYTVGSSTF----EECRYVSSFIICY---VIKASF 457
R+S +SH T + +I + +Y++ ++T + + S ++ Y I S
Sbjct: 286 RSSEVASHTLTYLTCVANKQLILVFLYSLINTTLRLRPDSWKASYSTLVPYNDSSIALSK 345
Query: 458 LNQPLAFFICACEPYNYTTHYFRNLTNMGPHSSCRTRYYYSFTRFWL 598
L + P+ T YFR N+ P ++ +Y F+R L
Sbjct: 346 LTSQILLLFLDHTPHETTVEYFRQRLNLSPGAAIENQYRLYFSRLQL 392
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 364 DNVGGELSSVVLSHMRTFGRVAVCGAISTYNE 269
D V G L+ ++ H RV CG+ YN+
Sbjct: 330 DGVYGSLNCILFDHQHPVARVLKCGSRFVYND 361
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 94 GFESVIDAFIGLFRGDNIGKSIVK 23
GF+ +I++ +F DN+GK+ +K
Sbjct: 372 GFDGIINSLKNIFEEDNLGKTSLK 395
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 422 SFIICYVIKASFLNQPLAFFICACEPYNYTTHYFRNLTNM 541
SF I V+KA A P NY+THY + L+N+
Sbjct: 180 SFDIANVLKAGKKLLGSASRDYDVNPANYSTHYLQQLSNL 219
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = -2
Query: 325 HMRTFGRVAVCGAISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKN 146
H R F R+A+ ++TYN + L T++ SI+S ++ + F + N IQ
Sbjct: 472 HFRLFIRLALFCVLTTYNVS----LSQTILLTSIMSVVFLLQTGALAPFINDN-PLIQSG 526
Query: 145 LAWVKSGQLKYKEHLTEGFESVID 74
+ +++ Q +Y+ + V++
Sbjct: 527 MRHIRNLQDEYRRRRNRTAQRVVE 550
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 421 QFYNLLRDQSQLPESTIGIFHLCLRTL*LHNPLFSQFDQHGTPQLLPH 564
+F+ +L+ SQLP LR L L + LFS F T L+PH
Sbjct: 155 EFFPILKLCSQLPS---------LRNLTLDSNLFSNFISSNTVLLIPH 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,012
Number of Sequences: 5004
Number of extensions: 59611
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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