Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b16
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787 163 8e-41
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 148 4e-36
06_03_0679 - 23464009-23464381,23464804-23464886,23466537-234667... 144 4e-35
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 143 9e-35
12_01_0756 + 6869100-6869327,6869943-6870123,6870233-6870399,687... 140 9e-34
12_01_0760 + 6910325-6910558,6911305-6911455,6911949-6912115,691... 136 2e-32
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 134 4e-32
01_06_1628 + 38745964-38746480,38747116-38747282,38747325-387474... 121 6e-28
12_01_0759 + 6894556-6894628,6894653-6894738,6895039-6895121,689... 119 2e-27
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 66 3e-11
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544... 54 7e-08
02_05_1140 + 34386042-34386302,34386738-34386917,34386999-343870... 33 0.20
02_02_0618 - 12190727-12191698 31 1.0
06_02_0036 - 10844876-10846173,10846490-10847012 29 4.2
05_03_0590 - 15884485-15884489,15884702-15884790,15885086-158852... 27 9.7
>04_04_0380 - 24833533-24834161,24834247-24834427,24834560-24834787
Length = 345
Score = 163 bits (397), Expect = 8e-41
Identities = 89/209 (42%), Positives = 120/209 (57%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF +IC P+ GE GQ AK+MGC V+G AG+D+K + L
Sbjct: 137 GMAGFTAYVGFHEICAPREGERVYVSAASGAVGQLVGQFAKLMGCYVVGSAGSDDKVRLL 196
Query: 463 IQEAGFDHVANYKT-ADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
++ GFD NYK +D+ LK P G+D YF+NVGG + VL +MR GRVA CG
Sbjct: 197 REKFGFDDAFNYKKESDLSAALKRCFPEGIDIYFENVGGAMLDAVLLNMRVRGRVAACGM 256
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS YN + D + +IV+K+L++EGF V+ R E +K +VK G++ Y E
Sbjct: 257 ISQYNLEHPDPVHNLT---AIVTKRLRIEGFIVSDHYARYREYEEKAARYVKEGKIAYVE 313
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ EG E+ A IGLF G N+GK +V V
Sbjct: 314 DVAEGLENAPAALIGLFSGRNVGKQVVVV 342
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 148 bits (358), Expect = 4e-36
Identities = 83/209 (39%), Positives = 116/209 (55%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF ++ +PK GE GQ+AKI+GC V+G AG+DEK L
Sbjct: 138 GMPGLTAYAGFFEVSKPKKGEYVFISAASGAVGQIVGQLAKIIGCYVVGSAGSDEKVSLL 197
Query: 463 IQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GF+ NYK D+ L+ P G+D YF+NVGGE VL +MR GR+A CG
Sbjct: 198 KTKFGFNDAFNYKKEPDLEAALRRYFPEGIDIYFENVGGETLDAVLPNMRLGGRIAACGM 257
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS YN + +K IV+K+L++EGF V F DR + + ++K G++ Y E
Sbjct: 258 ISQYNLERPEGVKNLFY---IVTKRLRMEGFLVFDFYDRYYQFEDEMARYLKEGKVAYVE 314
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ EG ++ A I LF G N+GK +V +
Sbjct: 315 DVVEGLDAAPAALIKLFTGRNVGKQLVAI 343
>06_03_0679 -
23464009-23464381,23464804-23464886,23466537-23466703,
23466821-23467007,23467093-23467311
Length = 342
Score = 144 bits (350), Expect = 4e-35
Identities = 80/209 (38%), Positives = 113/209 (54%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY G ++ +P+ GE GQ AK+ GC V+G AGT+ K L
Sbjct: 136 GTSGMTAYAGLYEVGRPEAGEKVFVSAASGSVGSLVGQFAKLAGCYVVGCAGTNAKVDLL 195
Query: 463 IQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GFD NYK D+ + LK P+G+D YFDNVGGE L++M T+GRVA+CG
Sbjct: 196 KNKLGFDDAFNYKDEPDMKSALKRYFPDGIDIYFDNVGGETLEAALANMNTYGRVALCGV 255
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS Y + +A ++ K++ + GF F R E W++ G+++ E
Sbjct: 256 ISEYTDAGH---RAVPDLLEVIYKRITIRGFFAWDFLTRFAEFTGVISDWIRQGKVQVIE 312
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+++G ESV AF LF GDNIGK +VK+
Sbjct: 313 DISDGLESVPSAFAALFSGDNIGKKMVKL 341
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 143 bits (347), Expect = 9e-35
Identities = 80/209 (38%), Positives = 115/209 (55%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF ++ +PK GE GQ+AKI GC V+G AG+DEK L
Sbjct: 53 GMPGLTAYGGFFEVAKPKKGEYVFISSAFGAVGQIVGQLAKITGCYVVGSAGSDEKVNLL 112
Query: 463 IQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GFD NYK D+ LK P+G+D YF+NVGG + VL +MR GR+A CG
Sbjct: 113 KTKFGFDDAFNYKKELDLEAALKRCFPDGIDIYFENVGGAMLDAVLPNMRVAGRIAACGM 172
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS YN + + + IV+K+L+++GF V F D + ++ ++K G++ Y E
Sbjct: 173 ISQYNLEQPEGVYNMI---CIVTKRLRMQGFLVFDFYDMYYQIEEQIAGYLKEGKVAYTE 229
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ EG ++ A + LF +IGK +V V
Sbjct: 230 DVVEGLDAAPAALVKLFTSSSIGKQLVAV 258
>12_01_0756 +
6869100-6869327,6869943-6870123,6870233-6870399,
6870523-6870605,6870716-6871094
Length = 345
Score = 140 bits (339), Expect = 9e-34
Identities = 77/209 (36%), Positives = 114/209 (54%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF ++ +PK G+ GQ+AKI GC V+G AG+DEK + L
Sbjct: 137 GIAGLTAYGGFFEVSKPKKGDYVFVSAASGAVGQIVGQLAKITGCYVVGSAGSDEKVKLL 196
Query: 463 IQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GF NYK D+ LK P+G+D YFDNVGG + VL +MR G++ +CG
Sbjct: 197 KTKFGFHDAFNYKKELDLEGALKRCFPDGIDIYFDNVGGAMLDAVLPNMRIGGKITICGM 256
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS YN D ++ + +K L++EGF V+ + ++ +++ G++ Y E
Sbjct: 257 ISQYNLERPDGVRNLFY---LFAKSLRMEGFLVSNYIAIYHRYEKEMAGYLREGKVVYVE 313
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ EG E+ A IGLF G N+GK +V +
Sbjct: 314 DIVEGLEAAPAALIGLFTGRNVGKQLVTI 342
>12_01_0760 +
6910325-6910558,6911305-6911455,6911949-6912115,
6912227-6912309,6912395-6912773
Length = 337
Score = 136 bits (328), Expect = 2e-32
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF + +PK GE GQ+AKI GC VIG AG DEK L
Sbjct: 129 GMPGLTAYAGFFDVPKPKKGEYVFISGASGAVGQVVGQLAKITGCYVIGSAGYDEKVNLL 188
Query: 463 IQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GFD NYK D+ L+ P G+D Y++NVGG++ VL +M GR+ CG
Sbjct: 189 KSKFGFDDAFNYKKEQDLEAALRRYFPEGIDIYYENVGGKMLDAVLPNMSLGGRIVACGM 248
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS YN + ++ IV+K+L++EGF V + DR ++ ++K ++ Y E
Sbjct: 249 ISQYNLEQPEGVRNLYY---IVTKRLRMEGFHVFDYYDRYYRFEEEMAGYLKEEKVSYVE 305
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ EG ++ A I LF G ++GK +V V
Sbjct: 306 DVVEGLDTAPAALIRLFTGRSVGKQLVAV 334
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 134 bits (325), Expect = 4e-32
Identities = 84/212 (39%), Positives = 116/212 (54%), Gaps = 4/212 (1%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY F ++ +PK GET GQ+AKI GC V+G AG+DEK L
Sbjct: 150 GVTGLTAYAAFFEVGKPKKGETVFVSAASGAVGQIVGQLAKIAGCYVVGSAGSDEKVTLL 209
Query: 463 IQEAGFDHVANYK--TADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCG 290
+ GF NYK + D+ L+ P+G+D YFDNVGG L +MR GRV VCG
Sbjct: 210 KTKFGFHDAFNYKKESNDLTGALRRCFPDGIDIYFDNVGGATLDAALVNMRRGGRVVVCG 269
Query: 289 AISTYNETNADKLKATVVQPSIVSKQLKVEGFQV-NRFADRNMEGIQKNLA-WVKSGQLK 116
IS YN + + V+Q I+SK ++VEGF V N F M + +A ++K G++
Sbjct: 270 MISQYNLQEPEGVH-NVIQ--ILSKTIRVEGFAVFNHFGLYPM--FEDEMARYLKEGKVT 324
Query: 115 YKEHLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ + +G E +A IG+F G N+GK +V V
Sbjct: 325 VLQDVVKGIEKASEALIGMFSGRNVGKLLVAV 356
>01_06_1628 +
38745964-38746480,38747116-38747282,38747325-38747440,
38747718-38748114
Length = 398
Score = 121 bits (291), Expect = 6e-28
Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 12/221 (5%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKC--- 473
G G TAY GF +IC PK GE GQ+AK+ GC V+G AGT++K
Sbjct: 173 GMPGFTAYAGFYEICSPKKGEFVFVSAASGAVGQIVGQLAKLHGCYVVGSAGTNQKMHHS 232
Query: 472 --------QWLIQEAGFDHVANYKTA-DIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHM 320
+ L + GFD NYK D+ LK P G+D YF+NVGG + VL +M
Sbjct: 233 GFTAMFQVELLKGKFGFDAAFNYKEEPDLTAALKRYFPEGIDIYFENVGGPMLDAVLLNM 292
Query: 319 RTFGRVAVCGAISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLA 140
RT GR+AVCG +S T+ + +V K+++++GF + + +
Sbjct: 293 RTHGRIAVCGMVSQNALTDPVGIHNIF---CLVPKRIRMQGFIQSDHLHMFPQFVSDMAK 349
Query: 139 WVKSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGKSIVKVT 17
+ G++ Y E ++ G E+ A +GLF G N+GK +V V+
Sbjct: 350 HYRDGKIVYVEDMSIGLENAPAALVGLFSGKNVGKKVVCVS 390
>12_01_0759 +
6894556-6894628,6894653-6894738,6895039-6895121,
6895278-6895650
Length = 204
Score = 119 bits (286), Expect = 2e-27
Identities = 69/209 (33%), Positives = 112/209 (53%), Gaps = 1/209 (0%)
Frame = -2
Query: 643 GRVGNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWL 464
G G TAY GF ++ +PK GQ+AKI GC V+G AG+D+K L
Sbjct: 6 GMHGLTAYVGFFEMSKPKKA--------CGAIGQIVGQLAKIKGCYVVGSAGSDDKVNLL 57
Query: 463 IQEAGFDHVANYKT-ADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGA 287
+ GFD NYK D+ LK P G+D F+NVGG + VL +MR GR+ +CG
Sbjct: 58 KTKFGFDDAFNYKKETDLEAALKRCFPEGIDIDFENVGGAMLDAVLPNMRLGGRITMCGM 117
Query: 286 ISTYNETNADKLKATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLKYKE 107
IS Y+ + ++ + I++K+L++EGF + + ++ +++ G++ Y E
Sbjct: 118 ISQYHLERPEGVRNLMY---IITKRLRMEGFVIFDSIAVYRQFEEEMAGYLREGKVTYLE 174
Query: 106 HLTEGFESVIDAFIGLFRGDNIGKSIVKV 20
+ +G ++ A IG++ G N+GK +V +
Sbjct: 175 DIVQGLDAAPAALIGIYNGLNVGKQLVAI 203
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 65.7 bits (153), Expect = 3e-11
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 1/174 (0%)
Frame = -2
Query: 634 GNTAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWLIQE 455
G TA + Q G+ Q+AK+ G V+ G K L+
Sbjct: 417 GLTASIALEKAGQMASGQVVLVTAAAGGTGQFAVQLAKLAGNKVVATCGGKCKAA-LLSS 475
Query: 454 AGFDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGAISTY 275
G D V NY+ I LK P G D +++VGGE+ + L+ + GR+ V G IS Y
Sbjct: 476 LGVDRVINYQNEKIKDVLKKEFPRGADIIYESVGGEMFDLCLNALAVHGRLIVIGMISQY 535
Query: 274 NETNADKLK-ATVVQPSIVSKQLKVEGFQVNRFADRNMEGIQKNLAWVKSGQLK 116
+ K + T + I++K V GF + ++A + + K SG+LK
Sbjct: 536 QGEHGWKPRNYTGLCDKILAKSQTVAGFFLIQYAHLWQDHLDKLFDLYASGKLK 589
>01_06_1630 +
38753016-38753209,38753904-38754039,38754291-38754404,
38755053-38755112,38755223-38755252,38755523-38756206
Length = 405
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -2
Query: 388 PNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGAIS 281
P G+D YF+NVGG + VVL +MRT GR+AVCG +S
Sbjct: 68 PEGIDIYFENVGGPMLDVVLLNMRTHGRIAVCGMVS 103
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -2
Query: 133 KSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGK 35
+ G++ Y E ++ G E+ AF+GLF G N+GK
Sbjct: 115 RDGKIVYVEDMSIGLENAPAAFVGLFSGKNVGK 147
>02_05_1140 +
34386042-34386302,34386738-34386917,34386999-34387080,
34387180-34387287,34387442-34387630,34387814-34388010
Length = 338
Score = 33.1 bits (72), Expect = 0.20
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Frame = -2
Query: 532 QIAKIMGCVVIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPN---------- 383
QIAK +G V AG++EK + G D NYKT D +K
Sbjct: 161 QIAKHLGIKVFVTAGSEEKLA-ACKGLGADVCINYKTEDFVARVKEETNGKVTLDMEVYL 219
Query: 382 -GVDCYFDNVGGELSSVVLSHMRTFGRVAVCG 290
GVD DN+GG L+ + GR+ + G
Sbjct: 220 PGVDVILDNIGGLYLQRNLNSLAVDGRLFIIG 251
>02_02_0618 - 12190727-12191698
Length = 323
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +2
Query: 290 ATDRNSTKSSHVR*NYTAELSTHIIKIAVYTVGSSTFEECRYVSS 424
A D N+T SS + T+ ++H+IKI YTV E +VSS
Sbjct: 2 ANDTNNTSSSVIATETTS--ASHVIKIDGYTVTKDLMENGEFVSS 44
>06_02_0036 - 10844876-10846173,10846490-10847012
Length = 606
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 350 STHIIKIAVYTVGSSTFEECRYVSSFIICYVIKASFLNQPLAFFICAC 493
S H+ K+ ++ + + E+C ++ +I +IK + IC C
Sbjct: 263 SNHVDKLKLFGMSINVLEQCEHLEGDLIRLIIKEKLMPWNSGMGICLC 310
>05_03_0590 -
15884485-15884489,15884702-15884790,15885086-15885251,
15885333-15885393,15886256-15886392,15887936-15888002
Length = 174
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -2
Query: 310 GRVAVCGAISTY-NETNADKLKATVVQPSIVSKQLKVEGFQV 188
GRV + Y N+ +DK +ATV Q S ++K+L VEG +
Sbjct: 23 GRVGKTSLVLRYVNDVFSDKQEATV-QASYLTKRLVVEGVPI 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,712
Number of Sequences: 37544
Number of extensions: 358535
Number of successful extensions: 833
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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