Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt12b16
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical pr...   113   1e-25
Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical pr...   113   1e-25
Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical pr...    33   0.17 
AF078157-4|AAN84816.1|  365|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    29   3.8  
Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine rece...    28   5.0  
Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    27   8.7  
L16685-4|ABA00185.1|  165|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z46935-8|CAL36511.1|  365|Caenorhabditis elegans Hypothetical
           protein M106.3b protein.
          Length = 365

 Score =  113 bits (271), Expect = 1e-25
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
 Frame = -2

Query: 532 QIAKIMGCV-VIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNV 356
           QIA+I GC  VIG  G+D+KC  L +E GF+   NYKT ++   L   AP G+D Y+DNV
Sbjct: 193 QIARIEGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNV 252

Query: 355 GGELSSVVLSHMRTFGRVAVCGAISTYNETNADKLKATVVQPSIV-SKQLKVEGFQVNRF 179
           GG +S  V+  M   GRV +CG I+ YN               I+  + ++ E + V  +
Sbjct: 253 GGVISDDVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMY 312

Query: 178 ADRNMEGIQKNLAWVKSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGKSIVK 23
            D   E + +   W++  ++K KE + +G  +   AF+ +  G NIGK +++
Sbjct: 313 KDEIDEAVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGKMLIR 364


>Z46935-7|CAL36510.1|  373|Caenorhabditis elegans Hypothetical
           protein M106.3a protein.
          Length = 373

 Score =  113 bits (271), Expect = 1e-25
 Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 2/172 (1%)
 Frame = -2

Query: 532 QIAKIMGCV-VIGFAGTDEKCQWLIQEAGFDHVANYKTADIPTFLKGTAPNGVDCYFDNV 356
           QIA+I GC  VIG  G+D+KC  L +E GF+   NYKT ++   L   AP G+D Y+DNV
Sbjct: 201 QIARIEGCSKVIGICGSDDKCTVLKREFGFNDTINYKTENVSERLGHLAPEGIDIYWDNV 260

Query: 355 GGELSSVVLSHMRTFGRVAVCGAISTYNETNADKLKATVVQPSIV-SKQLKVEGFQVNRF 179
           GG +S  V+  M   GRV +CG I+ YN               I+  + ++ E + V  +
Sbjct: 261 GGVISDDVIRAMNNEGRVVLCGQIAVYNTDLPYPPPLPEHTTKIIKERNIQRERYLVLMY 320

Query: 178 ADRNMEGIQKNLAWVKSGQLKYKEHLTEGFESVIDAFIGLFRGDNIGKSIVK 23
            D   E + +   W++  ++K KE + +G  +   AF+ +  G NIGK +++
Sbjct: 321 KDEIDEAVAQLSEWLQQDKIKVKETIYDGLNAAPSAFVDMMNGKNIGKMLIR 372


>Z82081-5|CAB04958.1|  344|Caenorhabditis elegans Hypothetical
           protein W09H1.5 protein.
          Length = 344

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 6/180 (3%)
 Frame = -2

Query: 628 TAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWLIQEAG 449
           TAY         K G+T               QI +I+G   +    + +  + L++E  
Sbjct: 145 TAYRMLKDFIDLKKGDTVAQNGANSAVGKHVIQICRILGIKTVNVVRSRDNLEELVKELK 204

Query: 448 FDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCGAISTYNE 269
            D  A+        + +     GV    + VGG  SS+ L+ +   G     G + TY  
Sbjct: 205 -DLGADEVITQEELYSRKKKFPGVKLALNCVGGR-SSLFLASLLDHG-----GCMVTYG- 256

Query: 268 TNADKLKATVVQPSIVSKQLKVEGFQVNRFAD------RNMEGIQKNLAWVKSGQLKYKE 107
               K         ++ K + + GF ++R+ D      +  E  Q+   W+KSG++K +E
Sbjct: 257 -GMSKQPVDCPTGPLIFKDISLRGFWMSRWYDIQKSPEKRHEMYQELAGWMKSGEIKKQE 315


>AF078157-4|AAN84816.1|  365|Caenorhabditis elegans Hypothetical
           protein F25E5.16 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 479 FICACEPYNYTTHYFR 526
           F+C  E YN+TTH++R
Sbjct: 38  FVCQAEKYNWTTHFYR 53


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical
           protein T01D3.7 protein.
          Length = 2882

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 560 GRSCGVPCWSNCENNGLCS 504
           G  C +P + NC  NGLC+
Sbjct: 788 GFDCSIPLFCNCSGNGLCN 806


>Z49907-4|CAA90086.1|  454|Caenorhabditis elegans Hypothetical
           protein B0491.4 protein.
          Length = 454

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -2

Query: 289 AISTYNETNADKLKATVVQPSIVSKQL-KVEGFQVNRFADRNMEGIQKNLAWVKSGQLKY 113
           ++S Y   N+D++  T+    +   +L K   +Q N F D  +    + + W K G+ + 
Sbjct: 57  SLSAY-PPNSDEMTITIENVLVKYVELVKGSSYQFNVFGDIYLNWKDERMKWDKKGEFEN 115

Query: 112 KEHL 101
            EHL
Sbjct: 116 YEHL 119


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 95  FSKMFLVL*LT---AFDPSQVFLNAFHIPVGKSIHLEPFYFQLFTYN 226
           ++ +F  L LT    F  S +  N +++PV   IH+  FYF  F  N
Sbjct: 400 YAAIFAFLSLTWPSVFKSSNIISNKYYLPVMVRIHVVLFYFGSFASN 446


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +1

Query: 430 NLLRDQSQLPESTIGIFHLCLRTL*LHNPLFSQFDQHGTPQ 552
           +LL+D S+   + + +F   +RTL + NP+ + ++  G P+
Sbjct: 118 HLLKDYSRRCSTWLMVFIALIRTLMIRNPMSTTYESLGNPK 158


>Z92834-3|CAB07384.1|  328|Caenorhabditis elegans Hypothetical
           protein F39B2.3 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/113 (21%), Positives = 42/113 (37%)
 Frame = -2

Query: 628 TAYFGFSQICQPKPGETXXXXXXXXXXXXXXGQIAKIMGCVVIGFAGTDEKCQWLIQEAG 449
           TAY     +   K G+                Q+A       +G AG+ +  ++ ++  G
Sbjct: 133 TAYRALFHLAGAKTGDVILVHGASGGVGSALMQLAAWRNIEAVGTAGSADGIRF-VKSLG 191

Query: 448 FDHVANYKTADIPTFLKGTAPNGVDCYFDNVGGELSSVVLSHMRTFGRVAVCG 290
             +V N+      + +K   P G +  F+       +  L  +   GRVAV G
Sbjct: 192 ARNVYNHSDKQYVSKMKNDYPGGFNHIFEMAAHTNLNTDLGLLAPRGRVAVIG 244


>U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine
           receptor, class w protein121 protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 403 GM*VCQQFYNLLRDQSQLPESTIGIFHLCLRTL*LHNPLFSQFDQHGTPQ 552
           G+ + +    +++D ++   + + IF   +RTL + NPL +QF+  G P+
Sbjct: 110 GLVLARTLLIVVQDYARKCSTWLIIFIAMIRTLLVRNPLSNQFESLGKPK 159


>Z27079-1|CAA81593.2|  411|Caenorhabditis elegans Hypothetical
           protein T05G5.1 protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = -1

Query: 581 NCSSIGCGRSCGVP---CWSNCENNGLCSYRVRR 489
           N   I CG+S   P   C   CEN G+C + + R
Sbjct: 15  NVGLINCGQSLVSPQSNCKIRCENGGMCVFDLER 48


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 458 LNQPLAFFICACEPYNYTTHYFRNLTNMGPHSSCRTRYYYS 580
           L  PLA FI       +  HYF   T + P  S  TR  Y+
Sbjct: 279 LLSPLASFIFVTPYRRFIMHYFFKTTRVEPGESSLTRNIYT 319


>L16685-4|ABA00185.1|  165|Caenorhabditis elegans Hypothetical
           protein ZC21.10 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 51  PLNSPINASMTDSKPSVRCSLY 116
           P N PI     DS PS+RC L+
Sbjct: 69  PENMPIKEEPLDSFPSIRCQLF 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,217
Number of Sequences: 27780
Number of extensions: 337087
Number of successful extensions: 872
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)