Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b16
(647 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly pro... 25 0.83
AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly pro... 25 0.83
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 24 1.1
AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly pro... 24 1.1
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 23 1.9
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 2.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 2.5
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 2.5
>AY313893-1|AAQ82184.1| 437|Apis mellifera major royal jelly
protein MRJP6 protein.
Length = 437
Score = 24.6 bits (51), Expect = 0.83
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 490 GTDEKCQWLIQEAGFDHVANY 428
G+DEK Q IQ +D+ NY
Sbjct: 49 GSDEKRQAAIQSGEYDYTKNY 69
>AF004842-1|AAD01205.1| 598|Apis mellifera major royal jelly
protein MRJP5 protein.
Length = 598
Score = 24.6 bits (51), Expect = 0.83
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 490 GTDEKCQWLIQEAGFDHVANY 428
G+DE+ Q +Q +DH NY
Sbjct: 49 GSDERRQAAMQSGEYDHTKNY 69
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 24.2 bits (50), Expect = 1.1
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = -2
Query: 217 KQLKVEGFQVN---RFADRNMEGIQKNLAWVKSGQLKYKEHLTEGFESVI-DAFIGLFRG 50
+ K FQV ++ D N +K A ++SG+ YK ++ + F+ + R
Sbjct: 25 RDFKANIFQVKYQWKYFDYNFGSDEKRQAAIQSGEYNYKNNVPIDVDRWNGKTFVTILRN 84
Query: 49 DNIGKSI 29
D + S+
Sbjct: 85 DGVPSSL 91
>AF000632-1|AAC61894.1| 452|Apis mellifera major royal jelly
protein MRJP2 protein.
Length = 452
Score = 24.2 bits (50), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 490 GTDEKCQWLIQEAGFDHVANY 428
G++E+ Q IQ +DH NY
Sbjct: 46 GSEERRQAAIQSGEYDHTKNY 66
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 490 GTDEKCQWLIQEAGFDHVANY 428
G+DE+ I+ FDH NY
Sbjct: 51 GSDERRDAAIKSGEFDHTKNY 71
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.4 bits (48), Expect = 1.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 529 FDQHGTPQLLPHPILLQFH 585
+D+H P+ L P ++ FH
Sbjct: 17 YDKHRAPKFLGQPTIVYFH 35
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 240 TVALSLSAFVSLYVEIAPQTA 302
T+ LSL+ F++L E PQ +
Sbjct: 231 TILLSLTVFLNLVAETLPQVS 251
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 240 TVALSLSAFVSLYVEIAPQTA 302
T+ LSL+ F++L E PQ +
Sbjct: 231 TILLSLTVFLNLVAETLPQVS 251
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 240 TVALSLSAFVSLYVEIAPQTA 302
T+ LSL+ F++L E PQ +
Sbjct: 231 TILLSLTVFLNLVAETLPQVS 251
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 240 TVALSLSAFVSLYVEIAPQTA 302
T+ LSL+ F++L E PQ +
Sbjct: 299 TILLSLTVFLNLVAETLPQVS 319
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 490 GTDEKCQWLIQEAGFDHVANY 428
G+DEK Q IQ +++ NY
Sbjct: 43 GSDEKRQAAIQSGDYNYTMNY 63
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,363
Number of Sequences: 438
Number of extensions: 4091
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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