Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt12b13
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1507 - 37838645-37839311,37839393-37839499,37839588-378396... 33 0.21
04_01_0363 + 4754650-4755912 32 0.48
02_03_0131 - 15576422-15577021 31 0.63
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 31 0.84
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 31 1.1
03_05_0218 + 22058304-22058795 30 1.5
02_01_0630 - 4724316-4724945,4725083-4726012 29 3.4
10_08_0500 - 18357828-18358649 29 4.5
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 4.5
01_06_0464 + 29571791-29572240 29 4.5
09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356 28 5.9
09_01_0165 - 2436769-2437442,2438159-2438224,2438318-2438415,243... 28 5.9
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730... 28 5.9
07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319 28 5.9
12_02_1222 + 27145264-27148287 28 7.8
06_01_0734 + 5419951-5420475 28 7.8
02_05_1081 + 33971950-33972606 28 7.8
01_01_0905 + 7116121-7116236,7116285-7116339,7116948-7117005,711... 28 7.8
>01_06_1507 - 37838645-37839311,37839393-37839499,37839588-37839663,
37839747-37839869,37840051-37840208,37840311-37840385,
37840466-37840506,37840594-37840670,37840755-37840883,
37840990-37841060,37841237-37841332,37841489-37841584,
37841681-37841953,37842871-37842957,37843101-37843178,
37843350-37843514,37843622-37843768,37843921-37843983,
37844082-37844201,37844352-37844543,37844672-37844748,
37845094-37845196,37845684-37845887
Length = 1074
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = -3
Query: 507 GTRRYDEPPYD-DRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGR-GGPAPVAGGY 334
G + PY D H+D R + P +H G+ Y S GR P P AGGY
Sbjct: 949 GRDNHGRYPYARDNHHDSRGRV----PPYHQSGGNSYQSHSAPSAGPGRYAQPPPYAGGY 1004
Query: 333 ERDHYVPQY 307
R + Y
Sbjct: 1005 GRSYQPAPY 1013
>04_01_0363 + 4754650-4755912
Length = 420
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 453 RARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP----*GRDPSARIHAGPR 620
R RR+GGR +V PPP+ G R G VR+RP G +P+ R G R
Sbjct: 23 RQRRTGGRSTVDRDHVGGPPPVHGIDGPDRPGADR-TVRRRPGSARLGTNPAGRPWQG-R 80
Query: 621 RTHSAHHRAPPA 656
R H R A
Sbjct: 81 RHVRVHRRRQAA 92
>02_03_0131 - 15576422-15577021
Length = 199
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 307 HATSIGTRGRSATGP---RHVRGRRPAPVLAATDHE 209
H+ S RGRS+ P RH R R +P AATDH+
Sbjct: 77 HSHSHSHRGRSSPSPDAGRHKRRRDGSPAAAATDHK 112
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = +3
Query: 558 PAVRKRP*GRDPSARIHAGPRRTHSAHHRAPP 653
PA RK P RDPS +H RR HR PP
Sbjct: 31 PACRKPP-RRDPSDSVHKVARREIGGGHRRPP 61
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +3
Query: 528 SGSVRQGKQAPAVRKRP*GRD--PSARIHAGPRRTHSAHHRAPPADRVR 668
SG + +G AP+ R R D PS+ G RT + H R PA R R
Sbjct: 623 SGRMEEGTAAPSCRHRSRRTDKRPSSSGRHGSGRTANKHERPAPATRPR 671
>03_05_0218 + 22058304-22058795
Length = 163
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/59 (35%), Positives = 24/59 (40%)
Frame = +3
Query: 471 GRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPRRTHSAHHRA 647
G E RN+A R + G R G+Q R RP R S I RT H RA
Sbjct: 3 GGEEEERRNIA---SRRTNRGGARTGEQGCGWRSRPAARRRSGAILRAGGRTEEEHGRA 58
>02_01_0630 - 4724316-4724945,4725083-4726012
Length = 519
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +3
Query: 234 GAGRRPRTCRGPVALRPRVPMEVACIVVHSD--LSRNLRPQELDL 362
G+GRR C G + +P + + +A ++ H D L ++P ELD+
Sbjct: 448 GSGRR--MCPGIMFAQPNIELALATLLYHFDWSLPAGVKPSELDM 490
>10_08_0500 - 18357828-18358649
Length = 273
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 423 GEQVSGVHTVRARRSGGRHREAHRNVAYPPPLRC 524
G V V+ A R GGRH H + PPP +C
Sbjct: 74 GGGVEAVNAAAAPRQGGRH-AGHPPLPRPPPRQC 106
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -3
Query: 459 ERAQYERPR-PAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHY 319
E+++ RPR P G Y RR P Y RG GGY RD Y
Sbjct: 181 EKSRRGRPRTPTPGSYLGHRYDRREPRGRYRSRG------GGYGRDEY 222
>01_06_0464 + 29571791-29572240
Length = 149
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 447 TVRARRSGGRHREAHRNVAYPPPLRCDSGSVRQGKQAPAVRKRP*GRDPSARIHAGPR-- 620
T R R GG R HR V + L +G G P V +R ++R H G
Sbjct: 58 TARCYRGGGELRGLHRRVRHRAGL-LRAGEEGTGGAVPGVGRRRGSTSAASRPHGGGEAY 116
Query: 621 RTHSAHHR 644
R H+A R
Sbjct: 117 RRHAAGGR 124
>09_04_0096 - 14563288-14563614,14563717-14564048,14564137-14564356
Length = 292
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 444 ERPRPAHHIPNGDMYSRRSPAPMYSGRG 361
+R HH+P+ D + R SPAP S G
Sbjct: 203 DRGTTEHHLPSDDAHLRSSPAPANSVDG 230
>09_01_0165 -
2436769-2437442,2438159-2438224,2438318-2438415,
2439856-2440214
Length = 398
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/62 (27%), Positives = 23/62 (37%)
Frame = -3
Query: 486 PPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGRGGPAPVAGGYERDHYVPQY 307
PP + Y+ P +H N Y +P P +G A A GY+ P Y
Sbjct: 315 PPPPSAYQGNNPGYQGGGPGYHGGNPPPYQAGNPPPYQAGNPVFAGGAPGYQGQGGNPSY 374
Query: 306 MQ 301
Q
Sbjct: 375 QQ 376
>08_02_0402 -
16769239-16769504,16769842-16770016,16772762-16773028,
16773156-16773368
Length = 306
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 426 EQVSGVHTVRARRSGGRHREAHRNV 500
++V+G H R RR+G RH +A N+
Sbjct: 90 KEVNGAHERRRRRTGQRHGKAFANI 114
>07_01_1114 + 10294271-10294379,10296537-10296958,10297101-10297319
Length = 249
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 231 TGAGRRPRTCRGPVALRPRVPMEVAC 308
TG GRRP RGP A+ P C
Sbjct: 7 TGGGRRPPCRRGPAAVAPPARFSCRC 32
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 423 HIPNGDMYSRRSPAPMYSGRGG 358
H+PNG +Y R GRGG
Sbjct: 784 HLPNGSLYERLHEGQKLGGRGG 805
>06_01_0734 + 5419951-5420475
Length = 174
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 402 YSRRSPAPMYSGRGGPAPVAGG 337
Y+ PAP Y G PA VAGG
Sbjct: 11 YNGHQPAPYYYGYAQPARVAGG 32
>02_05_1081 + 33971950-33972606
Length = 218
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 498 VAYPPPLRCDSGSVRQGKQAPAVRKR 575
VA PPP + +V QG+++P RK+
Sbjct: 60 VASPPPKAAAAAAVPQGRRSPVARKQ 85
>01_01_0905 +
7116121-7116236,7116285-7116339,7116948-7117005,
7117637-7117731,7117823-7117926,7118310-7118438,
7118845-7120633,7120849-7121054,7121865-7121949,
7122183-7122422
Length = 958
Score = 27.9 bits (59), Expect = 7.8
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = -3
Query: 543 DERYQNHISVVEGTRRYDEPPYDDRHYDERAQYERPRPAHHIPNGDMYSRRSPAPMYSGR 364
DE +N E T+ + +D H DE+ ER + N D+ PA +
Sbjct: 733 DENKENLGYTTEQTKD-GQSAGNDEHMDEQTTGERSSATNVATNDDLSGNLQPAGILIEH 791
Query: 363 GGPAPVAGGYERD 325
G P++ Y ++
Sbjct: 792 SGDDPISPDYGKN 804
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,809
Number of Sequences: 37544
Number of extensions: 417956
Number of successful extensions: 1401
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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